CX309133

Overview
NameCX309133
Unique NameCX309133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:262..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_PEA (Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.623e-19
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  SW   K+N     + F+  I E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +T   LGA+H + GV + HF V K +LL+TIK
Sbjct:    3 FTDKQEALVNSSWESFKQNLSGNSILFYTIILEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNAT---LGAIHVQRGVTDPHFVVVKEALLQTIK 116          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB4_PEA (Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.126e-18
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + + T   LGA+H + GV++ HF V K +LL+TIK
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDVT---LGAIHIQKGVIDPHFVVVKEALLDTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB3_VICFA (Leghemoglobin 49 OS=Vicia faba PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.299e-18
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QL+  G+V ++  +   LGA+H + GVV+ HF V K +LL+TIK
Sbjct:    3 FTQQQEALVNSSWESFKQNPS-YSVLFYTIILEKAPAAKGMFSFLKDS-AGVVDSPKLQAHAEQVFGMVRDSAIQLQATGEVVLKNGS---LGAIHIQKGVVDPHFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_SESRO (Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+DS+   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+K
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLK 117          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_MEDTR (Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            +FT++QEALV  S+   K+N     + F+  I E AP+A+ LFSFL+DS   ++ + +L+ HA  VF +  +SA QLR  G V + ++    LGA+H + GVV+ HF V K +LL+TIK
Sbjct:    2 SFTDKQEALVNSSYEAFKQNLSGYSVFFYTVILEKAPAAKGLFSFLKDS-AGVQDSPQLQAHAEKVFGLVRDSASQLRATGGVVLGDAA---LGAIHIQKGVVDPHFVVVKEALLKTIK 116          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB_LOTJA (Leghemoglobin OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT +QEALV  S+   KKN     + F+  I EIAP+A+ +FSFL++S    + + +L+ HA  VF +T ++A QL   G+VT+ +++   LGAVH +  V + HF V K +LL+T+K
Sbjct:    3 FTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGP--KHSPQLQAHAEKVFALTRDAATQLVAKGEVTLADAS---LGAVHVQKAVTDPHFVVVKEALLQTVK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB3_SESRO (Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+D +   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+K
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDFDEVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLK 117          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGBA_PHAVU (Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V         LG++H + GV N+ F V K +LL+T+K
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVV----ADAALGSIHSQKGVSNDQFLVVKEALLKTLK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  S +  K+N     + F+  + E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +T   LGA+H + GV N HF V K +LL+TIK
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNAT---LGAIHVQKGVTNPHFVVVKEALLQTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_LUPLU (Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   91 TEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            T+ Q ALV  S+     N  +   +FF  + EIAP A+ LFSFL+ S+   + N  L+ HA  VF +T E+A+QL+  G V   ++T K LG+VH   GVV+ HF V K ++L+TIK
Sbjct:    5 TDVQVALVKSSFEEFNANIPKNTHRFFTLVLEIAPGAKDLFSFLKGSSEVPQNNPDLQAHAGKVFKLTYEAAIQLQVNGAV-ASDATLKSLGSVHVSKGVVDAHFPVVKEAILKTIK 120          
The following BLAST results are available for this feature:
BLAST of CX309133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB2_PEA8.623e-1944.92Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3[more]
LGB4_PEA1.126e-1844.92Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3[more]
LGB3_VICFA7.299e-1844.07Leghemoglobin 49 OS=Vicia faba PE=2 SV=3[more]
LGB2_SESRO2.124e-1742.37Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 ... [more]
LGB1_MEDTR2.774e-1742.86Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2... [more]
LGB_LOTJA8.070e-1741.53Leghemoglobin OS=Lotus japonicus PE=2 SV=1[more]
LGB3_SESRO8.070e-1741.53Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 ... [more]
LGBA_PHAVU1.054e-1643.70Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2[more]
LGB1_PEA1.054e-1644.07Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]
LGB1_LUPLU1.054e-1642.74Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309133 ID=CX309133; Name=CX309133; organism=Citrus clementina; type=EST; length=442bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGC
AAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCAAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAG
back to top