CX309133

Overview
NameCX309133
Unique NameCX309133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:262..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_VICFA (Leghemoglobin-1 OS=Vicia faba PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.798e-16
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  S  + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL  HA  VF M  +SAVQLR  G+V +      K G++H + GV++ HF V K +LL+TIK
Sbjct:    3 FTEKQEALVNSSSQLFKQNPSNYSVLFYTIILQKAPTAKAMFSFLKDS-AGVVDSPKLGAHAEKVFGMVRDSAVQLRATGEVVL----DGKDGSIHIQKGVLDPHFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V         LG++H +  + +  F V K +LL+T+K
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVV----ADAALGSIHSQKALNDSQFLVVKEALLKTLK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V         LG+VH +  V +  F V K +LL+TIK
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKASGTVV----ADAALGSVHAQKAVTDPQFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.091e-13
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSN-VPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT  QEALV  SW    +N     + F+  I E AP A+ +FS L+D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIK
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIK 117          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 47/118 (39.83%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  S+   K N  +  + F+  I E AP+A+ LF FL +   P   N KL  HA  +F +  +SA QLR  G V         LG++H + GV +  F V K +LL+T+K
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDP--TNPKLIGHAEKLFGLVHDSAAQLRAKGAVV----ADAALGSLHAQKGVTDPQFVVVKEALLKTVK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V         LG++H +  + +  F V K +LL+TIK
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVV----ADAALGSIHAQKAITDPQFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFT++QEALV  S+   K N  +  + F+  I E AP A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +       LG++H +  + +  F V K +LL+TIK
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDP--TNPKLTGHAEKLFGLVRDSAGQLKASGTVVI----DAALGSIHAQKAITDPQFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V         L ++H +  V +  F V K +LL+TIK
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKTNGTVV----ADAALVSIHAQKAVTDPQFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AF+++QEALV  ++   K N  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V         LGAVH +  V +  F V K +L++T+K
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVV----ADAALGAVHSQKAVNDAQFVVVKEALVKTLK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AF+++QE LV  ++   K +  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V         LGAVH +  V +  F V K +L++T+K
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVV----ADAALGAVHSQKAVNDAQFVVVKEALVKTLK 115          
The following BLAST results are available for this feature:
BLAST of CX309133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB1_VICFA1.798e-1643.22Leghemoglobin-1 OS=Vicia faba PE=1 SV=2[more]
LGB2_PHAVU9.865e-1541.18Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGBA_SOYBN8.352e-1440.34Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB2_VICFA1.091e-1340.34Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGB_PSOTE2.430e-1339.83Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB2_SOYBN2.430e-1339.50Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGB3_SOYBN3.174e-1338.66Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGB1_SOYBN2.057e-1239.50Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB1_VIGUN5.985e-1238.66Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN6.617e-1136.97Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309133 ID=CX309133; Name=CX309133; organism=Citrus clementina; type=EST; length=442bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGC
AAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCAAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAG
back to top