DY256609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 2.569e-24 Identity = 74/246 (30.08%), Postives = 129/246 (52.44%), Query Frame = 1 Query: 49 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 777 +A TPGFSG R G ++ + + +++R++AG + + + + + +VA+HE GHA+ G + + V KV++ PR A G +P D L +K+QLF R+ LGGRA+E + F EVT+GA DL+++T +A MV FGM+ IGP S + + + + R S+ L + +D + L +AY +++N + + + LLEKE ++ ++ A++ Sbjct: 509 LAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEG----LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEALI 747
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20 Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 1 Query: 178 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 777 + G GT + + + +VA+HE GHA+ G L + V KV++ PR A G + +P D L +K+QLF R+ LGGRAAE + F VT+GA DL+++T +A MV FGM+ IGP S + + + + R S+ L + +D + L RAY + +N + + + LLEKE ++ ++ A++ Sbjct: 512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEG----LVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEALI 710
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 8.004e-18 Identity = 76/298 (25.50%), Postives = 133/298 (44.63%), Query Frame = 1 Query: 1 VHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKS-----------KSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSL--------MDGSQSGDVIMRM-----MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 813 VH + K D+ + RT GFSG R+G++ I ++I D +D+ + G ++T+ + K L+A HE GH + L P D L+P G+ ++ F P +D + + ++V GGR AE V+FG+ VT G DL++IT +A++MV + + +G L + + G++I + MS +++E + R + E+A++ +R NR +D I LLEK ++G E + + + E+ V Sbjct: 678 VHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGD-NVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFV 974 The following BLAST results are available for this feature:
BLAST of DY256609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DY256609 ID=DY256609; Name=DY256609; organism=Citrus clementina; type=EST; length=1289bpback to top |