DY256609

Overview
NameDY256609
Unique NameDY256609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.569e-24
Identity = 74/246 (30.08%), Postives = 129/246 (52.44%), Query Frame = 1
Query:   49 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 777
            +A  TPGFSG               R G  ++ +   + +++R++AG  + + +   + + +VA+HE GHA+ G +    + V KV++ PR   A G    +P D   L +K+QLF R+   LGGRA+E + F   EVT+GA  DL+++T +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  +AY      +++N + +  +   LLEKE ++ ++  A++
Sbjct:  509 LAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEG----LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEALI 747          
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.552e-20
Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  178 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 777
            +  G  GT     +   + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  RAY      + +N + +  +   LLEKE ++ ++  A++
Sbjct:  512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEG----LVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEALI 710          
BLAST of DY256609 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 8.004e-18
Identity = 76/298 (25.50%), Postives = 133/298 (44.63%), Query Frame = 1
Query:    1 VHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKS-----------KSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSL--------MDGSQSGDVIMRM-----MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 813
            VH + K    D+    +  RT GFSG               R+G++ I  ++I D +D+ +    G ++T+ +            K L+A HE GH +   L P  D      L+P G+   ++ F P +D       +   +  ++V   GGR AE V+FG+  VT G   DL++IT +A++MV +   + +G   L        +  +  G++I        +    MS +++E     + R  +   E+A++ +R NR  +D I   LLEK  ++G E    + +   +  E+ V
Sbjct:  678 VHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGD-NVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFV 974          
The following BLAST results are available for this feature:
BLAST of DY256609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SPG7_HUMAN2.569e-2430.08Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_RAT8.552e-2032.52Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
FTSHC_ARATH8.004e-1825.50Cell division protease ftsH homolog 12, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1AC04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256609 ID=DY256609; Name=DY256609; organism=Citrus clementina; type=EST; length=1289bp
GTTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGAT
AGCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAA
ATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCT
AAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAAC
TGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTG
GCCACGCAATATGCGGAACTTTGACTCCAGGACACGATCCCGTTCAAAAA
GTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCC
TTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTG
TTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGAGCCT
GAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCACTGGTTTGGC
CAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGCCCATGGTCGC
TCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAATGATGGCAAGG
AACTCAATGTCTGAGAAGCTTGCTGAAGACATTGATGCTGCAGTCAAGAG
ACTATCAGACCGTGCCTATGAGATTGCGTTGAGCCAAATAAGGAACAACC
GTGAAGCCATTGACAAGATCGTGGAAGTTCTTCTTGAGAAGGAAACAATG
TCAGGGGATGAATTCCGGGCAATCCTCTCAGAGTTTGTCGAAATCCCAGC
TGAAAATAGGGTCCCTCCAGCTGTTCCAGCACCATTATCTGTATCTGTTT
GAGTGGCATTAATATTATCCATACTTGAAATTTCAGCCACTCTTTTAAAC
GCATACACTGGAATGTATAATACTCTGTATTCTTGATCAAATGTAAGTAG
GATTGGACACTAACTCAAAAATTCTGGATTGAATAAATTTCTAAAATTTT
TGCTTCCTGATTTTTGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATTTCGGGCCCCCCCCGGCCCATTCAAACCTAAAACTCAAAACAACTTT
ATGGATTGCGGGCCCCAAATTCTCAACCCCCCTTTTGGGCCAAAATCCCC
CCCCTAAAAGGGGAAGTCCAATATAAAAAATTTTACCCGGGGGCCCCCCT
CCTTTTTTTTTTAAACACGCCCCCGCGGGGAACGGGGGGGAAAAAAAAAA
CCCCCCGGTGGGGGGCTTTTTTTTCCCCCCCCCAACCAC
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