DY256650

Overview
NameDY256650
Unique NameDY256650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.517e-14
Identity = 64/196 (32.65%), Postives = 85/196 (43.37%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  S+  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E+   LKV E+K+ RLAM +M  F+ +A
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIV------------------DPLYPGGS-FDPLGLA---------EDPERSAELKVKELKNGRLAMFSMFGFFVQA 230          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.587e-14
Identity = 63/197 (31.98%), Postives = 85/197 (43.15%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQA 234          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.587e-14
Identity = 63/197 (31.98%), Postives = 85/197 (43.15%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQA 235          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 63/196 (32.14%), Postives = 82/196 (41.84%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  TQ++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 63/197 (31.98%), Postives = 86/197 (43.65%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R V    P  ++ +                    YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGNGPLGEAEDLL------------------YPGGS-FDPLGLA---------TDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 63/197 (31.98%), Postives = 86/197 (43.65%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R V    P  ++ +                    YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGNGPLGEAEDLL------------------YPGGS-FDPLGLA---------TDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 63/196 (32.14%), Postives = 82/196 (41.84%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R                      E       +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-------------------VAGEGPLGEAEDLLYPGGS-FDPLGLA---------TDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 63/196 (32.14%), Postives = 84/196 (42.86%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++  TQ++LMG +E  R      P  + ++                    YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGG--GPLGEGLDPL------------------YPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 62/197 (31.47%), Postives = 82/197 (41.62%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IHGRWAM   +G          G  +    WF+ G+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------DDAEAFAELKVKEIKNGRLAMFSMFGFFVQA 230          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.832e-14
Identity = 63/196 (32.14%), Postives = 86/196 (43.88%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 203          
The following BLAST results are available for this feature:
BLAST of DY256650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB23_APIGR1.517e-1432.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA2.587e-1431.98Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA2.587e-1431.98Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_SOYBN3.379e-1432.14Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_ARATH3.379e-1431.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.379e-1431.98Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SINAL4.413e-1432.14Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI4.413e-1432.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_HORVU7.528e-1431.47Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_SOLLC9.832e-1432.14Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BD07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256650 ID=DY256650; Name=DY256650; organism=Citrus clementina; type=EST; length=928bp
GAGATATCTTAAGAACCTGATCAAGCAAGCATTTTACTACTTAGTATTGA
TTGACAGCCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATG
GCGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCAT
AAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGA
CAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCT
TGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCT
CGATGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAA
AGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAAAACTGATCCACGGA
CGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAG
TGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCT
TCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTT
GAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGA
ATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTG
GTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCT
GGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAG
GCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGT
TGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTT
GGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCC
TAATCAATCGGATGTATATGAATTCCCC
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