DY256650

Overview
NameDY256650
Unique NameDY256650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.861e-13
Identity = 76/264 (28.79%), Postives = 100/264 (37.88%), Query Frame = 2
Query:   98 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWI--PAVKGGGNLIN--PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            MAAAT     +      +N    SQ  + G  + T          +     W     VK  G      P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:    1 MAAATMAISSSSFAGKAVNVPSSSQ--ITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.861e-13
Identity = 62/197 (31.47%), Postives = 82/197 (41.62%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.861e-13
Identity = 61/196 (31.12%), Postives = 81/196 (41.33%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 221          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 62/196 (31.63%), Postives = 84/196 (42.86%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR--------------------VAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.736e-13
Identity = 63/196 (32.14%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K  RLAM++M  F+ +A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFGELKVKELKKGRLAMLSMFGFFVQA 231          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 62/196 (31.63%), Postives = 85/196 (43.37%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG +E  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 62/197 (31.47%), Postives = 83/197 (42.13%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA            E    LKV E+K+ RLAM +M  F+  A
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLAEV---------PEAFAELKVKELKNGRLAMFSMFGFFVPA 194          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 62/196 (31.63%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G    +  A +G+      WF+AGA             P  I   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D +    +KV EIK+ RLAM +M  F+ +A
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--------------------VAGGPLGEVTDPIYPGGNF-DPLGLAD---------DPDAFADVKVKEIKNGRLAMFSMFGFFVQA 244          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 64/196 (32.65%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  P DYG+D  GL  DP      RE ++IH RWAM   +G    +  A +GI      WF+AGA            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 61/197 (30.96%), Postives = 81/197 (41.12%), Query Frame = 2
Query:  287 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            +P +L G  PGDYG+D  GL  DP      RE ++IH RWAM   +G          G  +    WF+ G+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGEPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
The following BLAST results are available for this feature:
BLAST of DY256650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB24_PETSP2.861e-1328.79Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_TOBAC2.861e-1331.47Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_CUCSA2.861e-1331.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC3.736e-1331.63Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_MAIZE3.736e-1332.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC4.879e-1331.63Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PEA4.879e-1331.47Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2A_PYRPY8.323e-1331.63Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PETSP8.323e-1332.65Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL8.323e-1330.96Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BD07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256650 ID=DY256650; Name=DY256650; organism=Citrus clementina; type=EST; length=928bp
GAGATATCTTAAGAACCTGATCAAGCAAGCATTTTACTACTTAGTATTGA
TTGACAGCCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATG
GCGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCAT
AAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGA
CAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCT
TGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCT
CGATGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAA
AGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAAAACTGATCCACGGA
CGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAG
TGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCT
TCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTT
GAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGA
ATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTG
GTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCT
GGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAG
GCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGT
TGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTT
GGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCC
TAATCAATCGGATGTATATGAATTCCCC
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