DY256650

Overview
NameDY256650
Unique NameDY256650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY256650 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 60/187 (32.09%), Postives = 83/187 (44.39%), Query Frame = 2 
Query:  290 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAKLIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 820
            P +L G  PGDYG+D  GL  DP      RE ++IH RWA+A  +G    +  A +G+      WF+AG+     G ++     SL+  Q +L  W              Q V          E +  A G  G    +  DPL L G+        D E+   LKV EIK+ RLAM +M  F+ +A
Sbjct:   65 PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA------------CQVVLMGA-----VEGYHVAGGRLG----EVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQA 230
The following BLAST results are available for this feature:
BLAST of DY256650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB48_MAIZE2.050e-1132.09Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BD07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256650 ID=DY256650; Name=DY256650; organism=Citrus clementina; type=EST; length=928bp
GAGATATCTTAAGAACCTGATCAAGCAAGCATTTTACTACTTAGTATTGA
TTGACAGCCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATG
GCGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCAT
AAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGA
CAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCT
TGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCT
CGATGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAA
AGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAAAACTGATCCACGGA
CGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAG
TGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCT
TCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTT
GAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGA
ATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTG
GTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCT
GGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAG
GCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGT
TGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTT
GGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCC
TAATCAATCGGATGTATATGAATTCCCC
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