DY256732

Overview
NameDY256732
Unique NameDY256732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256732 vs. ExPASy Swiss-Prot
Match: PDC1_SCHPO (Putative pyruvate decarboxylase C13A11.06 OS=Schizosaccharomyces pombe GN=SPAC13A11.06 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.629e-18
Identity = 85/299 (28.43%), Postives = 131/299 (43.81%), Query Frame = 3
Query:    9 VESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPE-GQPPKCEPKEPLRVNVL-----FQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV-----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIK-NWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSR 863
            +ES D  L  G + +D+++  +S  L ++ AV    D + I     +  V MK  L+ L K L ++       H    P  G   K +  E    N +     +    + L     +I ETG + F     + PK      Q+ +GSIG+SVGA  G   +V     P++R I  +GDGS Q+T  ++ST +R   K IIF+INN GYTIE  IH     YN I   W Y  +       E    T  V    ++ +   +      D +  +E+++   D  + L+E     S  N +
Sbjct:  279 IESTDLLLSIGALKSDFNTGSFSYHLSQKNAVEFHSDHMRIRYA-LYPNVAMKYILRKLLKVLDASMC-----HSKAAPTIGYNIKPKHAEGYSSNEITHCWFWPKFSEFLKPRDVLITETGTANFGVLDCRFPKDVTAISQVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGDGSLQLTITEISTCIRHNLKPIIFIINNDGYTIERLIHGLHASYNEINTKWGYQQIPKFFGAAENHFRTYCVKTPTDVEKLFSDKEFANADVIQVVELVMPMLDAPRVLVEQAKLTSKINKQ 571          
BLAST of DY256732 vs. ExPASy Swiss-Prot
Match: PDC_ASPPA (Pyruvate decarboxylase OS=Aspergillus parasiticus GN=pdcA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.073e-17
Identity = 79/291 (27.15%), Postives = 132/291 (45.36%), Query Frame = 3
Query:    9 VESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPL-RVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLG--YAQ----------SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVD---AIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELL 827
            V+S D  L  GP F++ +S  Y L    EK+V+  P+ + + N   F  + +  F++ L+++L  +      +  ++      P+  P + + +    ++     L +   ++ ETG   +      LP          + SIG+ + A LG  +AQ          S+   R I  IGDGSFQ+T Q++ST++      IIFLINN GYTIE  IH  +  YN +  W Y    +   A  +GE K  T +V    +L   + ++       L  +EV + + D    L+
Sbjct:  272 VDSCDLVLVFGPHFSNTNSYNYFLKPADEKSVLFSPNSIQV-NKDVFRDLPVGYFIEQLTQQLDISRIPTHKHDLVHPSLRTLPEVSPTDLVTQTGGFWKRFSPFLRTGDIILGETGTPGYGVNDFILPPQTRLFKPATWLSIGYMLPAALGASHAQRDLVASDQYHSLSNPRTILFIGDGSFQMTVQELSTIIHQKLNVIIFLINNDGYTIERCIHGRNQAYNDVAPWRYLKAAEFFGADQDGEYKASTWEVRTWADLDRVLNDSQLADGKGLRMVEVFMERLDAPDVLM 561          
BLAST of DY256732 vs. ExPASy Swiss-Prot
Match: ARO10_YEAST (Transaminated amino acid decarboxylase OS=Saccharomyces cerevisiae GN=ARO10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.887e-12
Identity = 77/308 (25.00%), Postives = 137/308 (44.48%), Query Frame = 3
Query:    3 EIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVI-LQPDRVVIA-----NGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQ-HIQK----MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEK----------------RVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCW-TTKVFCEEEL---IEAIENATGPKKDCLCFIEVLVHKDDTSKEL 824
            E  E  D  L  G   N+ ++  Y+   K    +I   P+ + +      N   F  +     LK L KR+  +  + +    +     +  + E     + +++ Q H+QK     L+    V+ ETG   F+ +    P    Y  Q  + SIG ++ A LG   ++ +                 R+I   GDG+ Q+T Q++ST+L+C     + + NN GYTIE  I  GP   YN + +W +T L +A  + +GK   +T + C  +L   +E ++N+   K+  +  +EV + + D  ++L
Sbjct:  317 EHFELCDLVLHFGVDINEINNGHYTFTYKPNAKIIQFHPNYIRLVDTRQGNEQMFKGINFAPILKELYKRIDVSKLSLQYDSNVTQYTNETMRLEDPTNGQSSIITQVHLQKTMPKFLNPGDVVVCETGSFQFSVRDFAFPSQLKYISQGFFLSIGMALPAALGVGIAMQDHSNAHINGGNVKEDYKPRLILFEGDGAAQMTIQELSTILKCNIPLEVIIWNNNGYTIERAIM-GPTRSYNDVMSWKWTKLFEAFGDFDGKYTNSTLIQCPSKLALKLEELKNSN--KRSGIELLEVKLGELDFPEQL 621          
The following BLAST results are available for this feature:
BLAST of DY256732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PDC1_SCHPO1.629e-1828.43Putative pyruvate decarboxylase C13A11.06 OS=Schiz... [more]
PDC_ASPPA3.073e-1727.15Pyruvate decarboxylase OS=Aspergillus parasiticus ... [more]
ARO10_YEAST3.887e-1225.00Transaminated amino acid decarboxylase OS=Saccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1DD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256732 ID=DY256732; Name=DY256732; organism=Citrus clementina; type=EST; length=1067bp
GTGAAATTGTGGAATCTGCTGATGCTTATTTGTTTGCTGGACCTATATTT
AATGACTATAGCTCGGTTGGGTACTCTCTTCTTCTCAAGAAGGAGAAGGC
AGTCATTCTGCAGCCTGATCGTGTGGTGATTGCTAATGGACCGGCATTTG
GTTGTGTTTTGATGAAGGATTTCCTCAAAGCACTTTCAAAGCGGCTCAAA
AGCAACACTACTGCTTATGAGAATTACCACAGGATTTATGTTCCTGAGGG
GCAACCTCCGAAGTGTGAACCCAAAGAGCCCTTGAGAGTGAATGTTCTGT
TCCAACATATACAGAAGATGCTGTCTAGTGAAACTGCTGTGATTGCTGAG
ACAGGGGACTCTTGGTTTAACTGCCAGAAACTGAAATTGCCTAAGGGATG
CGGGTATGAGTTCCAAATGCAATATGGATCAATTGGTTGGTCTGTTGGTG
CTACTCTTGGATATGCACAGTCTGTGCCAGAGAAGCGTGTCATTGCTTGC
ATAGGTGATGGTAGCTTCCAGGTAACTGCACAAGATGTGTCAACAATGCT
GCGATGTGGGCAGAAGACTATAATCTTCCTGATTAACAATGGTGGTTACA
CCATTGAAGTTGAGATCCATGATGGACCGTACAATGTGATCAAGAACTGG
AACTACACCGGGTTGGTTGATGCAATCCACAATGGCGAAGGCAAGTGCTG
GACAACCAAGGTCTTCTGCGAGGAGGAGCTCATCGAAGCCATTGAGAACG
CTACTGGACCCAAGAAGGATTGCTTGTGCTTCATTGAAGTACTTGTTCAC
AAGGATGATACAAGCAAAGAGCTTTTGGAATGGGGCTCCAGGGTCTCCGC
TGCCAATAGCCGCCCACCAAATCCTCAGTAGATATGAGGCGGCTCATATT
GGCAATTGCACTCTACTACCATTTTATAGCCAAATTAAATGCCCCCATGT
CTTTTTCTGTGGTTACTCCACTAATTTTTGGGGATTTTGAACTATTTGCG
TGGTTTCTTATGTAAATTTCATTTTTAAAATTTAAAAAATCCACTAAAAC
CTTCCTCCAATTGCTCC
back to top