DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.213e-21
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQG-SKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G SKD+ FEG  ++  L    +YP   PKV+F T  +HPNVD    I LDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +   + W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNE 134          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.893e-21
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  +     +GI  +   D+I   KG  +G + T +EG  + + +  P DYPF+PPK+ F+T  +HPNV    G ICLDIL+D+WS  Y +++ L+S+QSLL  P  S+P ++Q AQ++
Sbjct:   12 ELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVY 131          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.517e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   38 GISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD-------------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            G SA   +DN I+ W+  + G  DT++EG  ++  L FP DYP KPPK+KF +  +HPN+D  GN+C+ IL D             +W   + V TILLS+ S+L +PN  SP N  AA++   N  E++K V
Sbjct:   22 GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKV 154          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 55/145 (37.93%), Postives = 73/145 (50.34%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPE-EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVE 394
            EL  L+     GI A P+ E+NIF W   IQG  DT +    +   L FP DYP  PPK+ F     HPN+   G +C+ IL             +++WS    V  ILLS+ S+L EPNI S  N  A  LW  N+ E+ + V+
Sbjct:   12 ELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   59 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 472
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   59 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 472
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   59 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 472
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 397
            +L  L  +   G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 397
            +L  L  +   G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 397
            +L  L  +   G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UE2NL_HUMAN5.213e-2143.55Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC1_SCHPO8.893e-2140.83Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC7_CAEEL1.517e-2040.60Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC7_YEAST1.981e-2037.93Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2K_MOUSE5.764e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN5.764e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN5.764e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UB2G1_RAT9.832e-2035.37Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE9.832e-2035.37Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN9.832e-2035.37Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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