DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 391
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 53/156 (33.97%), Postives = 95/156 (60.90%), Query Frame = 2
Query:   38 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQ--DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA*F*EDLKELEEG---CEKGIDTRSFS 487
            GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L   +KW++ Y + +ILL++Q +L  P + +P+N +AA++    E   + + +L+  P     +D +EL +    C + I T SFS
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQ-MKDDSQELPKDPRKCIRPIKTTSFS 177          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVE---KLYKPP 412
            N++ W   I G   T +EG  Y L + F  DYP KPPK +F    FHPNV   G +CL IL ++  W  +  ++T+LL IQ LL  PN  SP       L+ +N+EEY K V+   K+Y PP
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPPP 158          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2
Query:   56 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            +E N+F W  +I G  DT++EG  +   +SFP +YP  PP V F +  +HPNV   G +C+ IL              ++W+  + V +I+LSI S+L  PN  SP N +AA+ W  N+ E+RK V +
Sbjct:   31 DEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSR 158          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 54/156 (34.62%), Postives = 95/156 (60.90%), Query Frame = 2
Query:   38 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA*F*EDLKELEEGCEKGI---DTRSFS 487
            GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L +  KW++ Y + +ILL++Q +L  P + +P+N +AA++ +  E   + + KL+  P     +D +EL +   K I    T SFS
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQ-MKDDSQELPKDPHKCIGPTKTTSFS 177          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC9_RAT2.861e-1943.75SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE2.861e-1943.75SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN2.861e-1943.75SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK2.861e-1943.75SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE2.861e-1943.75SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9A_DANRE2.861e-1943.75SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBE2U_HUMAN4.880e-1933.97Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC9_DICDI4.880e-1941.80Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC14_ARATH4.880e-1937.50Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBE2U_MACFA6.373e-1934.62Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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