DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRK 385
            EL  L  S   GI+  P E++I   +  + G   T +EG  ++  L   +D+P  PPK  F T  FHPNV   G IC++ L+  W+    ++ ILL+I+ LL  PN  S LN  A++ L  N ++Y K
Sbjct:   17 ELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCK 144          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 2
Query:   32 DSGI-SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKF-------------------ETGCF---HPNVDI-YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 358
            D+GI    P ED +F W   I+G   + FE   ++L +  P +YP  PPK+KF                      C+   HPNV+   G ICLDILQ KWS A+ +++ L++I  LL  P   SPLN   A L
Sbjct:   28 DTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  104 DTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 358
            D +++   ++ +++ P+ YP+ PPKV  +T  +HPN+D+ G++CL+IL+  W    ++ T++  + +L  EPN   PLN  AAQL
Sbjct:  116 DGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQL 200          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   50 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 367
            F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   51 FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   50 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 367
            F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   51 FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  104 DTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ--------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 400
            D+++ G   +  + FP+ YP +PP +KF +  FHPN+   G +C+ IL+              DKW+   ++RTI++SI  +L  PNISSP N  A+ ++  N EEY K V ++
Sbjct:   77 DSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRI 190          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   50 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRKMVEK 397
            FP+ +++  +K  I   +    +G  +  +    ++YP +PPKVK  T  +HPN+D+ GN+CL+IL++ W+   ++ +I+  +Q L  EPN   PLN +AA  L +N+ ++   V+K
Sbjct:   48 FPDPNDLLNFKLIISPDEGFYRDG-RFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 2
Query:    5 ELMALMMSG------DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLW-----SNQEEYRKMVEKLYKP 409
            +LM LMMS       + G+  F  E           G KD+++EG  +++ +  P+ YP+K P V F T  +HPNVD + G++CLD++   WS  +D+  +  + +  LL  PN S PLN +AA L      + ++  ++  EK  KP
Sbjct:   11 DLMKLMMSDYKVEMINDGMQEFFVE---------FSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYAKP 149          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    5 ELMALMMSG------DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLW-----SNQEEYRKMVEKLYKP 409
            ++M LMMS       + G+  F  E N         G KD++++G  +++ +  P+ YP+K P V F T  +HPNVD + G++CLD++   WS  +D+  +  + +  LL  PN S PLN +AA L      + ++  ++  EK  KP
Sbjct:   11 DMMKLMMSDYKVETINDGMQEFYVEFN---------GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYAKP 149          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 37/119 (31.09%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   56 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEKLYK 406
            +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S +++++ K  E+  K
Sbjct:   28 DEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBE2S_DICDI3.273e-1536.72Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBCX_PICAN4.275e-1536.84Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_DICDI4.275e-1536.47NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_XENTR7.292e-1535.85NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA7.292e-1535.85NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
Y1A1_ENCCU9.523e-1535.96Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC12_DROME9.523e-1533.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC5_ARATH1.624e-1433.11Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH2.771e-1432.43Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UB2L3_PONAB2.771e-1431.09Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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