DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 415
            EL  +  +   GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   22 ELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  158 YPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 352
            YP + PKVK +T  +HPN+D+ GN+CL+IL++ W    ++ T++  +  L  EPN   PLN  AA
Sbjct:   88 YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAA 152          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 2
Query:   62 DNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGC-FHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 352
            DN+  W   + G+  T++    Y+L + FP  YP + P+V F +    HP++   G+ICLDIL D WS A  V ++ +SI S+L     SSP   + A
Sbjct:   41 DNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS----SSPAKQRPA 134          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPE--EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKF--ETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLL 310
            EL+AL     +G++      ++ I  W   ++G++ TV+EG +++L   F + YPF+ P+V F  E    HP+V   G+ICL IL + WS A  V+++ LSI S+L
Sbjct:   11 ELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   41 ISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFET--GCFHPNVDIYGNICL---DILQDKWSSAYDVRTILLSIQSLL 310
            I A P EDNI  W   I G  DT ++G +Y  +L+FP+DYP+KPP ++  T  G F PN      +CL   D   D W+  + V TIL  + S +
Sbjct:   25 ILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTILNGLLSFM 115          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBE2S_DROPE3.387e-1229.08Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
RCE1_ARATH1.287e-1143.08NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC15_ARATH6.388e-1136.73Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBE2W_DANRE8.343e-1136.79Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC6_YEAST8.343e-1140.00Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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