DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.850e-26
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 2
Query:   38 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            G+SA P  DN+  W   I G  DT +E   +RL L F  DYP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 376
            E   LM     GISA P  DN   +K  I G  D+ FEG  + L L   +DYP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E+
Sbjct:   11 ETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEK 134          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 2
Query:   38 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            G+SA P  DN+  W   I G  DT +E   +RL L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 2
Query:   38 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            G+SA P  DN+  W   I G  DT +E   +RL L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.199e-25
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W + E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.045e-25
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC2_CANGA1.850e-2649.59Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBE2N_DICDI5.383e-2647.58Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC2_YEAST5.383e-2648.76Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA5.383e-2648.76Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2N_RAT1.199e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB1.566e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.566e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.566e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.566e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA2.045e-2546.34Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
back to top