DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E+  L      GI A P EDN+  +K T++G + + +EG ++ L L  P++YP  PP V+F T  +HPNVD  G ICL  L+  WS A  +RT+LLSIQ+L+G PN   PL++  A++W   E
Sbjct:   10 EIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENE 132          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 385
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    9 ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 385
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    9 ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 385
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    9 ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GISA P EDN+  +   I G   + +EG  ++L L  P +YP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W + E
Sbjct:   13 ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L     S  SA P  D++F W+ TI G  D+ + G  + LS+ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    9 ELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVY 127          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            E   L+     GISA P E+N+  +   I G   + +EG  ++L L  P +YP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W + E
Sbjct:   13 ETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL  + A  + +++E+Y ++  +
Sbjct:    9 ELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC13_SCHPO2.671e-2543.09Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UB2D1_MOUSE2.671e-2544.53Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.671e-2544.53Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.671e-2544.53Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC35_ARATH3.489e-2545.53Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC4_SCHPO7.772e-2547.06Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC36_ARATH1.015e-2444.72Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UB2D4_HUMAN1.015e-2442.42Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBCD1_DROME1.326e-2441.67Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_XENLA1.326e-2441.67Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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