DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++  +
Sbjct:    9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 385
            EL  L     +  SA P  +++F W+ TI G  D+ ++G  + L++ FP +YPFKPPKV+F T  +HPNV+  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + AQ++ +++++Y +
Sbjct:    9 ELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 385
            EL  L     +  SA P  +++F W+ TI G  D+ ++G  + L++ FP +YPFKPPKV+F T  +HPNV+  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + AQ++ +++++Y +
Sbjct:    9 ELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 388
            EL  L        SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  GNICLDIL+D+WS A  +  +LLSI SLL +PN   PL  + A ++ +++ +Y  M
Sbjct:    9 ELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAM 137
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 54/129 (41.86%), Postives = 84/129 (65.12%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 388
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    9 ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 54/129 (41.86%), Postives = 84/129 (65.12%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 388
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    9 ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 54/129 (41.86%), Postives = 84/129 (65.12%), Query Frame = 2 
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 388
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    9 ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UB2D2_RAT1.326e-2441.67Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.326e-2441.67Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.326e-2441.67Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.326e-2441.67Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT1.326e-2442.19Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.326e-2442.19Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC29_ARATH2.954e-2442.64Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UB2D3_RAT2.954e-2441.86Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.954e-2441.86Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.954e-2441.86Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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