DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L        SA P  D++F W+ TI G  D+ F G  + +++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+++WS A  V  +LLSI SLL +PN   PL  + A ++
Sbjct:    9 ELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIY 127          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L     S  SA P  +++F W+ TI G  D+ + G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI S+L +PN   PL  + A ++
Sbjct:    9 ELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVY 127          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEK 397
            EL  +     +  SA P  E++IF W+ TI G  D+ + G  + +S+ F +DYPFKPPKV F+T  +HPN+D  G+ICLDIL+++WS A     +LLSI SLL +PN + PL  + A L+  ++ +Y    +K
Sbjct:    9 ELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQK 141          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L     S  SA P  +++F W+ TI G  ++ + G  + +S+ FP DYPFKPPKV F+T  +HPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    9 ELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 53/129 (41.09%), Postives = 83/129 (64.34%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 388
            EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++   +ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    9 ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L     +  SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYPFKPPK+ F T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + A ++
Sbjct:   10 ELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 373
            EL  L     +  SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++   +
Sbjct:    9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   63 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 197          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   63 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 197          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 361
            EL  L     +  SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC30_ARATH8.593e-2445.38Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_COLGL8.593e-2444.54Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC12_ARATH8.593e-2442.11Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC11_ARATH1.122e-2343.70Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D3_BOVIN1.914e-2341.09Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC4_YEAST2.500e-2343.70Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC10_ARATH2.500e-2341.46Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UB2E2_MOUSE2.500e-2342.96Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN2.500e-2342.96Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC8_ARATH3.266e-2342.86Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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