DY256737

Overview
NameDY256737
Unique NameDY256737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   20 MMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 367
            M+S +S  S     +NI+ W   I+G   T +EG  + LS+ FP DYPFKPPK  F+T  +HPN++  G+IC++IL+DKW+ A  V  +LLSI  LL +PN   PL  +  QL+ N
Sbjct:   20 MISKESLFSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKN 135          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   69 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   69 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   69 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   55 ELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 189          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 406
            EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   55 ELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 189          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22
Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPE-EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 400
            E   L  +G  GI+A P  ED+ F W   IQG   T FEG  Y  +L FP+DYP  PP +KFE   FHPNV   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A ++W  ++EEY ++V +L
Sbjct:   13 EYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRL 159          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.764e-22
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 376
            EL  L     S  SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYP KPPK+   T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + A ++    +
Sbjct:    9 ELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRK 132          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.050e-21
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 2
Query:    5 ELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 388
            EL  + +      SA P+ DN++ W  TI G   +V+EG  + L + F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q   N+EE+ ++
Sbjct:   94 ELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRI 222          
BLAST of DY256737 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 2
Query:   65 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 397
            N+F W+  I G KDT++EG  YR+ + F +D+P  PPK KFE   FHPNV   G +CL +L +   W  +  ++ +L+ IQ LL  PNI  P  ++A Q++  N+ EY K V+K
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150          
The following BLAST results are available for this feature:
BLAST of DY256737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC31_ARATH3.266e-2344.83Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UB2E3_MOUSE4.265e-2342.22Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN4.265e-2342.22Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN4.265e-2342.22Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E1_MOUSE9.501e-2342.22Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN9.501e-2342.22Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC7_SCHPO2.117e-2240.82Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_CANAL2.764e-2241.13Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBCD2_DROME1.050e-2142.64Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC9_CAEEL3.056e-2142.11SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256737 ID=DY256737; Name=DY256737; organism=Citrus clementina; type=EST; length=606bp
ATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCAT
TCCCGGAGGAGGATAACATATTCTGCTGGAAAGGTACGATCCAGGGCAGC
AAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTCCCTTTCATTTCC
CAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCGAAACCGGCTGCT
TCCACCCCAATGTTGATATCTACGGCAATATTTGCTTGGACATTCTCCAG
GATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTGCTATCGATCCA
GTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAAACAGCCAGGCAG
CACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTTGAGAAGCTG
TACAAGCCTCCAAGTGCATAATTCTGAGAAGATTTGAAGGAATTAGAAGA
GGGGTGTGAAAAAGGGATTGATACAAGATCTTTTTCTTTCTTTCTGTAAG
AGAGGATTAAATGAAATTTTCTTTCAGTTTGGTTCATTCTTTCTTTGTTT
CTTTGTAGATTTAAAGAGCCCTTATTTTCTCCTTTATGAATTGATTTTAT
TTTAGA
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