DY256739

Overview
NameDY256739
Unique NameDY256739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1303
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 8.397e-23
Identity = 55/144 (38.19%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   91 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKNTLC*GLP 522
            ++LVTGGAG+IG+H AL+LL   F+V ++DNL      A+  +++L       +L+F   DL +   ++++F+   FDAV+HF A+  V ES   P RY+ N    T+ + +AMA +N + L++SS+   YG+PEK  +  G P
Sbjct:   74 HVLVTGGAGYIGSHAALRLLKDSFRVTIVDNLSRGNMGAIKVLQNLFSEP--GRLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTP 215          

HSP 2 Score: 105.145 bits (261), Expect = 9.284e-22
Identity = 65/166 (39.16%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  494 KKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADP-EWRIILLRYFNPVGAHESGKLGEDPKGI---PNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGHICALKKLFTSENIGCIAYNLGNGKGISVL*MVATFEKAFGKENPIKICPRR 979
            +K+P  E  P   +NPYG+ K+  E+I  D  K+   +  +++LRYFN +G+   G+LGE PK        +       A+G  P L V G DY T DG+ VRDYI V DL D H+ AL K   +E      YN+G GKG SV   V   +KA G +  +   PRR
Sbjct:  206 EKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK---AERGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRR 368          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.443e-22
Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  446 VRSWYFHHPQLSMDSLKKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGHICALKKLFTSENIGCIAYNLGNGKGISVL*MVATFEKAFGKENPIKICPRRGR 985
            VR   F     +    +++P VE  P    NPYG +K   + +    + A      + + YFN  GA+   +L  DP+   ++L+P + QVA GR   ++VYG DYPT D + VRDYIHV DLA+ H+ A+++   +E++ C   NLGNG G SV  +V T  +  G   P  + PRRGR
Sbjct:  112 VRRLVFSSTAATYGEPEQVPIVESAPTRPTNPYGASKLAVDHMITG-EAAAHGLGAVSVPYFNVAGANRGVRLVHDPE---SHLIPLVLQVAQGRREAISVYGDDYPTPD-TCVRDYIHVADLAEAHLLAVRRRPGNEHLIC---NLGNGNGFSVREVVETVRRVTGHPIPEIMAPRRGR 283          

HSP 2 Score: 93.9745 bits (232), Expect = 2.140e-18
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   97 LVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQ-KFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK 498
            LVTGGAG++G+  A  L+  G +VV++ NL       V      AG        F+ GD+R++D + K+F  +  FD V+HF A   V ESV  P +Y+DNN+ GT+ L +AM     ++LVFSS+A  YG+PE+
Sbjct:    6 LVTGGAGYVGSVVAQHLVEAGNEVVVLHNLSTGFRAGVP-----AGAS------FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAGVRRLVFSSTAATYGEPEQ 129          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.758e-22
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   94 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSS-ATIYGQP 492
            ILVTGGAGFIG+H   +L+   + V+++DNL       ++            K EF   D+R+KD LD+  + +  + VIH  A   V  SV++P    D N++GTIN+ + M KY+  K+VF+SS   +YG+P
Sbjct:    2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNIN-----------PKAEFVNADIRDKD-LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEP 123          

HSP 2 Score: 40.4318 bits (93), Expect = 6.758e-22
Identity = 40/138 (28.99%), Postives = 66/138 (47.83%), Query Frame = 2
Query:  500 IPCVEDFPYGAMNPYGRTKQWCEE-IAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGHICALKKLFTSENIGCIAYNLGNGKGISV 910
            +P  E+ P   ++PYG +K   EE I    +    E+ I  LRY N  G  +      DPKG    +  +I ++   + P   ++G      DG+  RD+++V D+A  ++ AL   + +E +     N+G GK  SV
Sbjct:  126 LPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAI--LRYSNVYGERQ------DPKGEAGVISIFIDKMLKNQSPI--IFG------DGNQTRDFVYVGDVAKANLMALN--WKNEIV-----NIGTGKETSV 240          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.027e-20
Identity = 63/178 (35.39%), Postives = 96/178 (53.93%), Query Frame = 2
Query:  446 VRSWYFHHPQLSMDSLKKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGHICALKKLFTSENIGCIAYNLGNGKGISVL*MVATFEKAFGKENPIKICPRR 979
            VR+  F     +    + +P  ED P    NPYG TK   +        A   +    LRYFN  GA+  G +GE+ + I  +L+P + QVA+G   ++ ++G D+PT+DG+ +RDYIH+ DLAD HI AL+      +     +NLG+G+G SV  ++ T  +  G   P ++ PRR
Sbjct:  107 VRNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYG-FAATSLRYFNVAGAY--GLVGEN-REIETHLIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQSNVEGSH---RIFNLGSGEGYSVKQVIDTCREVTGHLIPAEVAPRR 277          

HSP 2 Score: 97.4413 bits (241), Expect = 1.936e-19
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query:   94 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPE 495
            +LVTGGAG++G+ C+  LL  G +V ++DNL     +AV        P  A  +E   GD+  KD  D + SS  FDAV+HF A   V ESV+ P  Y+ +N++ T+ L  AM + N + +VFSS+A  YG+PE
Sbjct:    3 LLVTGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAV--------PLGATFVE---GDI--KDVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVFSSTAATYGEPE 123          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.463e-16
Identity = 44/133 (33.08%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   94 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHN--SVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 486
            IL+TG AGFIG+H A +L+  G  V+ +D++++  SV    DR+K +      +   F+   L N DDL K+F  ++ + V++  A   V  S+++P  Y D+N++G +N+ +    +N + L+++SS+++YG
Sbjct:    3 ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVYG 131          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.943e-16
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   88 KNILVTGGAGFIGTHCALQLL--HGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLE---FHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK 498
            KNILVTG AGFIG H +  L+  +   KV+ IDNL+N     +   ++    E+ K  E   F   D  + DDL +    ++ D ++H GA   V  S+Q+P+ Y  +N +GT+N+++   +++ +K+V++SS+++YG   K
Sbjct:    4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRN----EILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRK 141          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.708e-13
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   97 LVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVD--RVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK 498
            LVTG AGFIG H + +LL  G +VV IDNL++    ++   R++ LA P      +FH  DL +++ +  LF+S  F+ V       AV  S+++P  Y D+NL G +N+ +       + L+++SS+++YG   K
Sbjct:    4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF----QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRK 135          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: RFBE_SALTI (CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.536e-13
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   94 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEK 498
            +L+TGG GF+G++ A   L  G  +++ DNL  S   A D +  L+        EF  GD+RNK+D+ +L +    D+  H     A+  S+ +P   F+ N+ GT+NL +A+ +YN    +++SS+  +YG  E+
Sbjct:    3 LLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQ 133          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.029e-12
Identity = 40/135 (29.63%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   88 KNILVTGGAGFIGTHCALQLLHG--GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 486
            + IL+TGGAGFIG+H A+ L       K++++D L     +    + +L         +F+ G++ + + L+ +F  +K D VIH  A   V  S +   ++ +NN++GT  L +    Y  KK ++ S+  +YG
Sbjct:   10 QKILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKL-----DYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYG 139          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.106e-12
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   88 KNILVTGGAGFIG-THCALQLLHGGFKVVLIDNL-HNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 486
            K+ L+TGGAGFIG T   L L     ++ ++D L + S PE ++++K  +      +  F  GD+  ++D+D+ F  + +D VIHF A   V  S+     +   N++GT  L +A+ K   KKL+  S+  +YG
Sbjct:    3 KSYLITGGAGFIGLTFTKLMLRETDARITVLDKLTYASHPEEMEKLKQNS------RFRFVKGDISVQEDIDRAFD-ETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLKGKAKKLIHISTDEVYG 130          
The following BLAST results are available for this feature:
BLAST of DY256739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ARAE1_ORYSJ8.397e-2338.19Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
GALE_STRLI2.443e-2237.22UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_METJA6.758e-2238.06Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
GALE_CORDI1.027e-2035.39UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
CAPI_STAAU4.463e-1633.08Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA9.943e-1634.51Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
YCL2_ECO112.708e-1335.29Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
RFBE_SALTI3.536e-1333.09CDP-paratose 2-epimerase OS=Salmonella typhi GN=rf... [more]
TGDS_DICDI1.029e-1229.63dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
SPSJ_BACSU5.106e-1233.33Spore coat polysaccharide biosynthesis protein sps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DE08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256739 ID=DY256739; Name=DY256739; organism=Citrus clementina; type=EST; length=1303bp
GATTCATTTTCTTCTTTTTAATATAATCGTCGCTCTCTCCTTCTTTCCCC
TCCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAATATCCTGG
TGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTCAGCTTCTA
CATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAACTCTGTCCC
TGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCTCGCTAAGA
AGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACTTGGATAAG
CTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGTGCCCTTAA
GGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATAATAATT
TGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAACTGTAAG
AAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGAAAAAAA
TACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATGGACGA
ACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGGCAGACCC
AGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGTGCTCATG
AGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAATCTCATG
CCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTAATGTTTA
TGGTCAGGATTATCCAACAAAGGATGGTAGTGCGGTCCGAGACTACATTC
ATGTAATGGACTTGGCAGATGGTCACATATGTGCTCTTAAGAAGCTCTTT
ACATCTGAAAATATAGGTTGTATAGCGTACAACCTGGGGAATGGAAAGGG
CATATCCGTGCTTTGAATGGTTGCAACCTTTGAAAAAGCTTTCGGGAAAG
AAAATCCCATCAAAATCTGTCCAAGACGGGGTAGGTGATGCAACAGCTGT
TTACCCTGCCCACAAACAAGCCAATAAAAAACTTTGTTGGAAACCCCAAG
TATGGCATTGAAGGAAATGTGTTCCCTCCCCAATGGGAACTTGGGCAAAA
AAAAACCCAAAAGGGGGAAACCAGAAAAAAAAGGAACTTTAAAGAGATTC
GTTTATTAGACAGAAGGAAAAAAAAAAATTAAAAAAAAACTTTTTCTATA
TTTTCCCCCAAGAAGGGGTTTCGGGGGGCCCTCTTTTCCCTGGGGGGAAA
AAAGAATCTTTTTTTTTTTTTGTGGTTTTTATAAAAAAAATTTATTATAT
ATA
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