DY256739

Overview
NameDY256739
Unique NameDY256739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1303
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.710e-12
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   91 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV--GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKN 501
            ++LVTG AGF+G+HC+L L   G  V+  DN ++    ++ R +     EL +K +  +  GDL +   L KLF    F  ++H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG   +N
Sbjct:  113 SVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQ----ELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTEN 248          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.560e-11
Identity = 38/137 (27.74%), Postives = 67/137 (48.91%), Query Frame = 1
Query:   88 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYN-CKKLVFSSSATIYGQPE 495
            KN+ VTG  G +G++   +L+  G  V  +   H  VP++     +L   E  KK+    G L +   +++     + D V H  A   V  + ++P   F+ N++GT N+ +A  K+   K+++ +SS   YG  E
Sbjct:    7 KNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDH--VPQS-----NLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQE 136          

HSP 2 Score: 33.8834 bits (76), Expect = 1.560e-11
Identity = 39/155 (25.16%), Postives = 61/155 (39.35%), Query Frame = 2
Query:  494 KKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPY-IQQVAVGRHPELNVYGQDYPTKDGSAVRDYIHVMDLADGHICALKKLFTSENIGCIAYNLGNGKGISVL*MVATFEKAFGKEN 955
            + +P  E+ P    +PY  +K   + I+                Y  PV     G L        N ++P  IQ V  G  PE+          DG+ VRDY ++ D    ++   +K+    N+   A+N  N   ++VL +V   EK   K N
Sbjct:  136 ENLPYDENMPLQGKHPYDVSKSCADLIS----------HTYFHTYGLPVCITRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEIR--------SDGTFVRDYFYIEDAVQAYLLLAEKM-EENNLAGEAFNFSNEIQLTVLELV---EKILKKMN 268          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.630e-11
Identity = 42/149 (28.19%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   70 LAMASEKNILVTGGAGFIGTHCALQLLHG--GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQA-MAKYNCKKLVFSSSATIYGQPEKNTL 507
            +A  + KNIL+TG AGFI +H A +L+     +K+V++D L     +    +K+L   + +   +F  GD+ + D ++ L  ++  D ++HF A   V  S  + F +  NN+ GT  L +A       ++ +  S+  +YG+ +++ L
Sbjct:    1 MASYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKL-----DYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAL 144          
BLAST of DY256739 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.630e-11
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = 1
Query:   91 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV-GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEK 498
            ++LVTG  GF+G+H +L L   G  VV +DN +N    ++ R +      L+ +  F V GDL +   L KLF    F  V+H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG  EK
Sbjct:   89 SVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSL---LSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEK 223          
The following BLAST results are available for this feature:
BLAST of DY256739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GAE6_ARATH8.710e-1231.43UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YFNG_BACSU1.560e-1127.74Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
RHM1_ARATH9.630e-1128.19Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
GAE1_ARATH9.630e-1133.33UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1DE08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256739 ID=DY256739; Name=DY256739; organism=Citrus clementina; type=EST; length=1303bp
GATTCATTTTCTTCTTTTTAATATAATCGTCGCTCTCTCCTTCTTTCCCC
TCCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAATATCCTGG
TGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTCAGCTTCTA
CATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAACTCTGTCCC
TGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCTCGCTAAGA
AGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACTTGGATAAG
CTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGTGCCCTTAA
GGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATAATAATT
TGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAACTGTAAG
AAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGAAAAAAA
TACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATGGACGA
ACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGGCAGACCC
AGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGTGCTCATG
AGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAATCTCATG
CCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTAATGTTTA
TGGTCAGGATTATCCAACAAAGGATGGTAGTGCGGTCCGAGACTACATTC
ATGTAATGGACTTGGCAGATGGTCACATATGTGCTCTTAAGAAGCTCTTT
ACATCTGAAAATATAGGTTGTATAGCGTACAACCTGGGGAATGGAAAGGG
CATATCCGTGCTTTGAATGGTTGCAACCTTTGAAAAAGCTTTCGGGAAAG
AAAATCCCATCAAAATCTGTCCAAGACGGGGTAGGTGATGCAACAGCTGT
TTACCCTGCCCACAAACAAGCCAATAAAAAACTTTGTTGGAAACCCCAAG
TATGGCATTGAAGGAAATGTGTTCCCTCCCCAATGGGAACTTGGGCAAAA
AAAAACCCAAAAGGGGGAAACCAGAAAAAAAAGGAACTTTAAAGAGATTC
GTTTATTAGACAGAAGGAAAAAAAAAAATTAAAAAAAAACTTTTTCTATA
TTTTCCCCCAAGAAGGGGTTTCGGGGGGCCCTCTTTTCCCTGGGGGGAAA
AAAGAATCTTTTTTTTTTTTTGTGGTTTTTATAAAAAAAATTTATTATAT
ATA
back to top