DY256756

Overview
NameDY256756
Unique NameDY256756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.326e-28
Identity = 86/229 (37.55%), Postives = 115/229 (50.22%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGL-VKSSLRPD--FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            R+  +  NWK   T  E +   S + E +                F  L V + L  D    + AQN + +K GA+TGEIS  ML +L+  +VI+GHSERR   +E+N+ +  K+  A    L  I CVGE  E+RE G T +V+  Q K     +       IV+AYEPVWAIGTG  A    A EV   +R+ +      E++   RI YGGSVN  N KE  AQ E
Sbjct:    2 RRKIIAANWKMYKTCAETE---SFIKEFKELSKGYEEKEIVICPPFTSLYVANKLLEDTPIKLGAQNMFWEKEGAYTGEISPIMLKDLNCSYVIIGHSERRQYFSETNDMINKKLKSAFEYELIPIFCVGEKWEEREKGKTEEVITEQVKKGLQGLEKEKVEKIVIAYEPVWAIGTGHSAKGEDANEVAKLIRRIISEIYDEEVSQKVRIQYGGSVNPQNIKEFLAQSE 227          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.184e-28
Identity = 83/229 (36.24%), Postives = 109/229 (47.60%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVS----VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            R   + GNWK + T  E ++ +      L                     L +V    R  D  V AQN   +  GAFTGEIS  ML  L + +VI+GHSERR    E++E V  ++A A   GL  I CVGE+ +QRE G T   +  Q       +    N+V+AYEP+WAIGTG+     +A  V   +R+ L     P       I+YGGSV   N  EL AQPE
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGNAQLP-------ILYGGSVKAGNIDELMAQPE 222          

HSP 2 Score: 22.3274 bits (46), Expect = 5.184e-28
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  727 VDGFLVGGAFFNPE 768
            +DG LVGGA  +P+
Sbjct:  223 IDGVLVGGASLDPQ 236          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_RHOSR (Triosephosphate isomerase OS=Rhodococcus sp. (strain RHA1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.650e-28
Identity = 82/232 (35.34%), Postives = 113/232 (48.71%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            M RK  + GNWK N    E    V+KI   L                     +  +    +      AQ+      GA+TGEIS  ML  L   +V++GHSERR +  E N+ V  K   AL  G+  I C+GE L+ REAG  +     Q +     +S    + +V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++A+  R++YGGSVN  N  E+  Q +
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFSLPAKYFDKVDVTVIPPFTDIRSVQTLVEGDKLLLTYGAQDVSAHDSGAYTGEISGSMLAKLGCTFVVVGHSERRTLHCEDNDTVLAKTKAALKNGITPIVCIGEGLDVREAGEHVSYNVEQLRGSLAGLSGEDIAKVVIAYEPVWAIGTGRVASAANAQEVCAAIRATLGELASQDVASGVRVLYGGSVNAKNVGEIVGQTD 232          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.650e-28
Identity = 80/221 (36.20%), Postives = 114/221 (51.58%), Query Frame = 3
Query:   66 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQP 722
            + GNWK     +E  + +  ++  Q                 L  +      +  V AQN + +  GAFTGE+S + L++L +  V+LGHSERR    E+++ V  K+  AL   L    CVGE+L  +E   T   +  Q   I   V   +  NI++AYEPVWAIGTGK ATP  A +V  ++R  + A  S + + A RIIYGGSV+ AN K +  QP
Sbjct:   10 IAGNWKMYKCKDEALEFIQKVSL-QVPDQTQVQTLIFPQLTLLDSLAQLQGTNLQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQP 229          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.650e-28
Identity = 81/219 (36.99%), Postives = 113/219 (51.60%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEG-QXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGAN 698
            RK F+ GNWK + T+ E   +   + +G Q                   + + +   +  + AQN   +  GA T EIS  ML+   + +VILGHSE R  L +++E +  K+   L    K +I C+GETL +RE   T+DVV  Q +   ++   S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKGSNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDN 220          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.741e-28
Identity = 88/233 (37.77%), Postives = 114/233 (48.93%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQ 719
            M R+  + GNWK N    E    V+KI   L E                   +  +    +      AQ+    + GA+TGE+S  ML  L   +V++GHSERR    E++E V  KV   L  G+  I CVGE LE REAG     ST  ++ A      +++     +V+AYEPVWAIGTGKVAT   AQEV   LR  L      EIA   R++YGGSV  +N  EL  Q
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPEKYFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQ---VVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQ 230          

HSP 2 Score: 21.1718 bits (43), Expect = 6.741e-28
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  724 NVDGFLVGGAFFN 762
            +VDG LVGGA  N
Sbjct:  232 DVDGALVGGASLN 244          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.754e-28
Identity = 83/225 (36.89%), Postives = 112/225 (49.78%), Query Frame = 3
Query:   57 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQ 719
            K  + GNWK N T  E +  +   +    +                   L L+ +S      VAAQN      GAFTGEISA+ML +L + +VI+GHSERR I  E  E + +K+  A    L  + CVGE+L + EA  T  V+  Q   +   V ++   ++AYEP+WAIGTGK AT   A++V     K +  N    I    R+IYGGSVN  N  EL  Q
Sbjct:    2 KKIIIGNWKMNKTVHETRDFIQKFDIFYSKNLGKIKDNLDFAIAPSFTSLALISTSKIDKLKVAAQNLSQFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGESLSEFEANETEKVIIGQINEVKS-VLNFEKAIIAYEPIWAIGTGKTATAQIAEQV----CKLIKNNFGKNI----RVIYGGSVNSKNINELLLQ 217          

HSP 2 Score: 22.3274 bits (46), Expect = 6.754e-28
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  724 NVDGFLVGGAFFNPE 768
            N+DG LVG A  +PE
Sbjct:  219 NIDGALVGKASLDPE 233          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.637e-28
Identity = 82/232 (35.34%), Postives = 114/232 (49.14%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ +
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQED 232          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.637e-28
Identity = 82/232 (35.34%), Postives = 114/232 (49.14%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ +
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQED 232          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.637e-28
Identity = 82/232 (35.34%), Postives = 114/232 (49.14%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ +
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQED 232          
The following BLAST results are available for this feature:
BLAST of DY256756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DICTD4.326e-2837.55Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_SYNJB5.184e-2836.24Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_RHOSR5.650e-2835.34Triosephosphate isomerase OS=Rhodococcus sp. (stra... [more]
TPIS_ONYPE5.650e-2836.20Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_BORHD5.650e-2836.99Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_SACEN6.741e-2837.77Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_MYCFL6.754e-2836.89Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_MYCSS9.637e-2835.34Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK9.637e-2835.34Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ9.637e-2835.34Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2AA01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256756 ID=DY256756; Name=DY256756; organism=Citrus clementina; type=EST; length=960bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGAATGTTGACGGATTTTTGGTTGGTGGT
GCTTTCTTTAACCCGGAGTTCATTGACCTCATCCAATCTGCTGAGCTGAA
AGTAAATTCTTTGACCTTATTTCAAGGGCAGTTTGCTGATAAAATAATTA
CTGTTTGTGAATTTTAGAATACGTTGGGTTTAATTTCAAAATTATTTGTT
TTTGGATAGGCGCGACAACTGAAAACCTTTTTTAAACCTTTTTAATTTAC
CTTTGTTCCC
back to top