DY256756

Overview
NameDY256756
Unique NameDY256756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.433e-39
Identity = 96/226 (42.48%), Postives = 125/226 (55.31%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            RK  V GNWK N T +E   +   LNE                   L  V   +      V A+NC  K  GA+TGE+SAEM+ +    +VILGHSERR    E+   + +KV  AL+ GL  I C+GE LE+REA    +VVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL + P+
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPD 227          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.193e-39
Identity = 93/227 (40.97%), Postives = 130/227 (57.27%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ +
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRAD 228          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.193e-39
Identity = 93/227 (40.97%), Postives = 130/227 (57.27%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            RK  V GNWK N T +E   +   L+                    L  + +++      VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ +
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRAD 228          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.193e-39
Identity = 91/228 (39.91%), Postives = 135/228 (59.21%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            M R   V GNWK NG     K +++ + +                  +L   +S++     + +QN   ++ GAFTGE+SA ML  +   +VI+GHSERR +  E++  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++L A   P+IA + R++YGGSV   N   L AQ +
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFL-AKDDPDIAQSLRLLYGGSVKADNAALLFAQSD 223          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.447e-39
Identity = 96/226 (42.48%), Postives = 127/226 (56.19%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQP 722
            RK  V GNWK N T  E   +   L+E                   L  V +++  +   VAA+NC  K+ GA+TGE+SA M+ +    +VILGHSERR   +E+ E +  KV  AL+ GL  I C+GE LE+REAG   +VV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N  N KEL A+P
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFAKP 227          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.510e-39
Identity = 100/227 (44.05%), Postives = 124/227 (54.63%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGSV   N KE  AQP+
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATQGTDLKVGAQNMHFEKNGAFTGEISPVALSDLKVSYVVLGHSERREMFAETDETVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPGNIKEYMAQPD 227          

HSP 2 Score: 23.483 bits (49), Expect = 6.510e-39
Identity = 10/32 (31.25%), Postives = 20/32 (62.50%), Query Frame = 1
Query:  703 RNWLHSLNVDGFLVGGAFFNP-EFIDLIQSAE 795
            + ++   ++DG LVGGA   P  F+ L+++ +
Sbjct:  220 KEYMAQPDIDGALVGGASLEPASFLGLLEAVK 251          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.439e-38
Identity = 87/226 (38.50%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            R+ F+ GNWK + T+ E   +V  L                       ++ +  + D  VAAQNC+ +  GAFTGE+S  +L +    +VI+GHSERR +  ES+ F+  KV   +  GL  I C+GETLE+REA  T DV+  Q +   + +  ++   IV+AYEPVWAIGTGK AT  QAQ+ H  +R  +      ++A   RI+YGGSV   N   L  QP+
Sbjct:    2 RRPFIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPD 227          

HSP 2 Score: 23.483 bits (49), Expect = 1.439e-38
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  712 LHSLNVDGFLVGGAFFNPE-FIDLIQ 786
            L   ++DG LVGGA  N E FI +++
Sbjct:  223 LQQPDIDGALVGGASLNAEDFIRIVK 248          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.875e-38
Identity = 97/226 (42.92%), Postives = 121/226 (53.54%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLV---KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQP 722
            RK  V GNWK N      +++ + L                    FL L    K        + AQNC  +  GA+TGE+SA ML       VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RE+G T D+V+AQ +     VS  SN+V+AYEPVWAIGTGK AT  QA+EVH  +R  +        A A RI YGGSV  +N  EL A P
Sbjct:    2 RKKIVVGNWKMNNGVAASEQLAADLLAA--LGSSFTGCDVGIAPTFLSLTTAGKVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMP 225          

HSP 2 Score: 26.1794 bits (56), Expect = 1.875e-38
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  724 NVDGFLVGGAFFN-PEFIDLIQSA 792
            N+DG L+GGA  N  +F+ ++Q+A
Sbjct:  226 NIDGGLIGGASLNAADFVAIVQAA 249          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.703e-38
Identity = 100/227 (44.05%), Postives = 124/227 (54.63%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            RK  + GNWK N T  E    V  + +GQ                FL  LV  +   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A        + V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ +
Sbjct:    2 RKPIIAGNWKMNKTLAEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAKAEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSD 227          
BLAST of DY256756 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.530e-38
Identity = 97/228 (42.54%), Postives = 124/228 (54.39%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPE 725
            R+  V GNWK NG+      +++ +    G                  L L+  S      + AQ+      GA+TGE+S  ML+     +VI+GHSERR    E+NE V  K   ALS GL  I CVGETLEQREAG T +VV  Q  A+   +  +  + IV+AYEPVWAIGTGK ATP  AQEVH  LR+ L A  + + A   RI+YGGS+   N KEL A P+
Sbjct:    2 RRKLVAGNWKMNGSLAANALLLAEIKAEFGNPACDVAVCVPAPYLAQCLSLLSDST---IALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA-QAATEVRILYGGSMKPDNAKELLAMPD 225          
The following BLAST results are available for this feature:
BLAST of DY256756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACTN1.433e-3942.48Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_PORGI3.193e-3940.97Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG33.193e-3940.97Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_ALCBS3.193e-3939.91Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_PARD85.447e-3942.48Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_BACCN6.510e-3944.05Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_PELCD1.439e-3838.50Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_CHLCH1.875e-3842.92Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_BACWK2.703e-3844.05Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_HERAR3.530e-3842.54Triosephosphate isomerase OS=Herminiimonas arsenic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AA01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256756 ID=DY256756; Name=DY256756; organism=Citrus clementina; type=EST; length=960bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGAATGTTGACGGATTTTTGGTTGGTGGT
GCTTTCTTTAACCCGGAGTTCATTGACCTCATCCAATCTGCTGAGCTGAA
AGTAAATTCTTTGACCTTATTTCAAGGGCAGTTTGCTGATAAAATAATTA
CTGTTTGTGAATTTTAGAATACGTTGGGTTTAATTTCAAAATTATTTGTT
TTTGGATAGGCGCGACAACTGAAAACCTTTTTTAAACCTTTTTAATTTAC
CTTTGTTCCC
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