DY256759

Overview
NameDY256759
Unique NameDY256759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            IVLSGG+T+F G+ DR+ KE+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  299 IVLSGGTTLFHGLDDRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF 377          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            IVLSGG+T+FPG+ +R+ KE+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  297 IVLSGGTTLFPGLEERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 375          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            IVLSGG+T+F G+ DR+ +E+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S++ R+CF
Sbjct:  299 IVLSGGTTLFQGLDDRLLRELEQLASKGTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTSADFKEFGTSVIQRRCF 377          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 230
            N+VLSGGSTMFPGI  RM K +T LAPS+ +I + A P+RK SVWIGGSIL  +  FQ++ I K +YDE GPS V+
Sbjct:  280 NVVLSGGSTMFPGIEYRMYKGLTQLAPSTTEIVINAEPDRKNSVWIGGSILGLVPNFQELCIDKEDYDEYGPSFVN 355          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            IVLSGG+TMFPG+ DR+ KE+  LA     IK+ A  +R YS WIGGS++ S++TF+QMW++  ++ E G  +V RKCF
Sbjct:  298 IVLSGGTTMFPGLQDRLLKELEDLAFEGTPIKITASSDRCYSAWIGGSVMTSMTTFKQMWVTAEDFKEYGAFVVQRKCF 376          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            +IVLSGG+T+ PG+ +R+ KE+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  297 DIVLSGGTTLLPGLEERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 376          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 239
            +++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  347 SVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 239
            +++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  347 SVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 239
            +++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  347 SVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT28_DICDI (Putative actin-28 OS=Dictyostelium discoideum GN=act28 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 215
            N+VLSGGSTMFPGI  RM KE+T LAPS+ +I + APPERK SVWIGGSIL  +  F ++   K +YDE G
Sbjct:  281 NVVLSGGSTMFPGIEYRMYKELTQLAPSTTEIVINAPPERKNSVWIGGSILGLVPNFPELCFDKEDYDEYG 351          
The following BLAST results are available for this feature:
BLAST of DY256759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
ACTT2_HUMAN8.146e-1951.90Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ACTT1_MACFA8.146e-1949.37Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ACTT2_BOVIN1.389e-1849.37Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ACT27_DICDI1.389e-1860.53Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]
ACTT1_MOUSE1.815e-1851.90Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ACTT1_HUMAN3.095e-1847.50Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ACL6A_MOUSE4.043e-1850.00Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6A_MACFA4.043e-1850.00Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN4.043e-1850.00Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ACT28_DICDI1.176e-1761.97Putative actin-28 OS=Dictyostelium discoideum GN=a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256759 ID=DY256759; Name=DY256759; organism=Citrus clementina; type=EST; length=690bp
GTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCCGGTATTGCCGAC
CGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAA
GGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAA
TCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAG
TATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCT
TTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGT
GTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTG
GGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTC
TTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCC
TTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTT
TTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATG
CTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCTCC
CCCTCTCAAAAGGAACATTAATGTTAATAGCTATTGTATGAGAAAACTTT
AATTAGTGTCAGCTTGCAGTCATAAATTTGGTTATTAAAA
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