DY256759

Overview
NameDY256759
Unique NameDY256759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 218
            N+VL+GG++  PG++DR+  E+    P+ +K ++++     ER+Y  W+GGSILASL TF Q+W+ + EY+E GP
Sbjct:  438 NVVLTGGTSKIPGLSDRIMHELNKSLPA-LKFRMLSSGHLRERQYQGWLGGSILASLGTFHQLWVGREEYEEVGP 511          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 215
            N+V++GGS+  PG++DR+  E+    P+ +K +V+A     ER+Y  W+GGSIL+SL TF Q+WI K EY+E G
Sbjct:  411 NLVITGGSSTIPGLSDRILNELNMKFPA-LKFRVLATGQSIERQYQSWLGGSILSSLGTFHQLWIGKKEYEEVG 483          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPSIVHRKCF 242
            +IVLSGGSTM+PG+  R+ KEI  L           +    K ++  PP RK+ V++GG++LA +   +   W++K EY+E GP ++ RKCF
Sbjct:  298 HIVLSGGSTMYPGLPSRLEKEIKRLYFERVAKGNKVSMQKFKCRIEDPPRRKHMVFLGGAVLAEIMKDKTAFWMNKSEYEEQGPRVL-RKCF 388          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 215
            N+V++GG++  PG+ DR+S E+    P+ +K +++      ER+Y  W+GGSILASL TF Q+W+ K EY E G
Sbjct:  397 NVVITGGTSSLPGLMDRISAELNRSLPA-LKFRMLTSGQLRERQYQGWLGGSILASLGTFHQLWVGKQEYAEVG 469          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITAL--------APSSM---KIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPS 221
            IVLSGGS+M+PG+  R+ KE+  L         PS +   K+++  PP RK+ V+IGG++LAS ++    MW+SK E+ ESGPS
Sbjct:  300 IVLSGGSSMYPGLPSRLEKELKQLWFSRVLHNDPSRLDKFKVRIEDPPRRKHMVFIGGAVLASIMADKDHMWLSKQEWQESGPS 383          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP---SIVHRKC 239
            N+++ GG+++  G + R+  E++ L P S ++K+ A     ER Y+ W+GGSIL+SL TF Q+WIS+ EY+E G    +++ ++C
Sbjct:  349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            I+L+GGST+FP   +R+ KE+  L P   ++K++A  +     W GGS+LA    F+ M I+K EY+E G     R+ F
Sbjct:  350 IILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFF 428          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            I+L+GGST+FP   +R+ KE+  L P   ++K++A  +     W GGS+LA    F+ M I+K EY+E G     R+ F
Sbjct:  350 IILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFF 428          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP2_CAEEL (Actin-related protein 2 OS=Caenorhabditis elegans GN=arx-2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESG 215
            +IVLSGG+TM+PG+  R+ KE+  L           A    KI++ APP RK+ V++GG++LA+L     Q  W+SK EY+E G
Sbjct:  300 HIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESG 215
            +IVLSGG+TM+PG+  R+ KE+  L           A    KI++ APP RK+ V++GG++LA+L     Q  W+SK EY+E G
Sbjct:  298 HIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 381          
The following BLAST results are available for this feature:
BLAST of DY256759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
ARP4_KLULA1.943e-1244.00Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP4_CANGA1.943e-1247.30Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP2_ACACA7.385e-1240.22Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ARP4_ASHGO1.645e-1144.59Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP2_YEAST1.645e-1145.24Actin-related protein 2 OS=Saccharomyces cerevisia... [more]
ARP4_SCHPO2.149e-1138.82Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP6_ORYSJ2.806e-1139.24Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI2.806e-1139.24Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP2_CAEEL2.806e-1142.86Actin-related protein 2 OS=Caenorhabditis elegans ... [more]
ARP2_CAEBR2.806e-1142.86Actin-related protein 2 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256759 ID=DY256759; Name=DY256759; organism=Citrus clementina; type=EST; length=690bp
GTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCCGGTATTGCCGAC
CGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAA
GGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAA
TCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAG
TATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCT
TTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGT
GTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTG
GGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTC
TTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCC
TTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTT
TTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATG
CTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCTCC
CCCTCTCAAAAGGAACATTAATGTTAATAGCTATTGTATGAGAAAACTTT
AATTAGTGTCAGCTTGCAGTCATAAATTTGGTTATTAAAA
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