DY256774

Overview
NameDY256774
Unique NameDY256774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256774 vs. ExPASy Swiss-Prot
Match: ECHB_MACFA (Trifunctional enzyme subunit beta, mitochondrial OS=Macaca fascicularis GN=HADHB PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.758e-25
Identity = 108/352 (30.68%), Postives = 159/352 (45.17%), Query Frame = 1
Query:    7 IVVGTVLAPGSTRAMECRMAAFYAGFPETVPLKTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----------------VNSISVVGQVNPKVEIFTQAR-DCLLP-------------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP-SVMGIGPAVAIPAAVKSAGLQIDDIILFEINEAFASQYVYCIK----------------KLGL*S-EKVNVNGSARAPWHPLGATGARL 915
            I+ GTV+    T  +  R AA  AGF +  P  TV   C S  QA+      I +G  D+ +A G+E M+                +N    +GQ   ++ + ++ R + L P             MG +++ +A  F V+R EQD                G   D ++P           V  + T++ D+GIRP++ +  +AKLKPAF K  GT TA N+S ++DGA A+L+M    A+  G       R F  V  DP   + +GP  A P  ++ AGL ++DI  FE +EAF+ Q +   K                K+GL   EK N  G + +  HP GATG RL
Sbjct:  102 IIFGTVIQEVKTSNV-AREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDIPIRHSRKMRKLMLDLNKAKSMGQ---RLSLISKFRLNFLAPELPAVAEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSD-VVPFR---------VPGKDTVTKDNGIRPSS-LEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRL 438          
BLAST of DY256774 vs. ExPASy Swiss-Prot
Match: ECHB_HUMAN (Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 3.758e-25
Identity = 108/352 (30.68%), Postives = 159/352 (45.17%), Query Frame = 1
Query:    7 IVVGTVLAPGSTRAMECRMAAFYAGFPETVPLKTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----------------VNSISVVGQVNPKVEIFTQAR-DCLLP-------------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP-SVMGIGPAVAIPAAVKSAGLQIDDIILFEINEAFASQYVYCIK----------------KLGL*S-EKVNVNGSARAPWHPLGATGARL 915
            I+ GTV+    T  +  R AA  AGF +  P  TV   C S  QA+      I +G  D+ +A G+E M+                +N    +GQ   ++ + ++ R + L P             MG +++ +A  F V+R EQD                G   D ++P           V  + T++ D+GIRP++ +  +AKLKPAF K  GT TA N+S ++DGA A+L+M    A+  G       R F  V  DP   + +GP  A P  ++ AGL ++DI  FE +EAF+ Q +   K                K+GL   EK N  G + +  HP GATG RL
Sbjct:  101 IIFGTVIQEVKTSNV-AREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDLNKAKSMGQ---RLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSD-VVPFK---------VPGKDTVTKDNGIRPSS-LEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRL 437          
BLAST of DY256774 vs. ExPASy Swiss-Prot
Match: FADI_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.372e-25
Identity = 99/321 (30.84%), Postives = 151/321 (47.04%), Query Frame = 1
Query:  106 TVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISV----------------VGQ---------------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDP-KTGVEKRVTISVDDGIRPNTTIADLAKLKPAF-KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP-SVMGIGPAVAIPAAVKSAGLQIDDIILFEINEAFASQYVYCIK----------KLG-------L*SEKVNVNGSARAPWHPLGATGARL 915
            +V+R C++  Q+  ++A ++  G   +GIA G +S +V+ I V                +GQ               V P V  ++      L MG T+E +A+   ++R +QD                GK   E++   T    P K+  EK      D+ IR ++ +   AKL+P F KK GT TA NA+ ++DGA AVL+M  S A   G   LG  +S++   +D    M +GP+ A P A+  AG+ ++D+ L E++EAFA+Q +  IK          KLG       +   K NV GS+ A  HP  ATG R+
Sbjct:   94 SVSRACATSFQSTVNIAESMMLGNISVGIAGGADSTSVSPIGVSKNLARALTDLQKTKTLGQKFNVLKKLGLKDLLPVPPAVAEYSTG----LSMGQTAEQMAKSHSISRADQDKLAHRSHSLAAQSWNEGKLAGEVM---TAYPAPYKSAFEK------DNNIRFDSKLEGYAKLRPVFDKKHGTVTAANATPLTDGASAVLMMTESRAKALGYTPLGYIKSYAFAAIDVWEDMLMGPSYATPMALDRAGMTLNDLTLIEMHEAFAAQTLANIKMFASDKFAQEKLGRSKATGEIDMAKFNVMGSSLAYGHPFAATGTRM 401          
The following BLAST results are available for this feature:
BLAST of DY256774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
ECHB_MACFA3.758e-2530.68Trifunctional enzyme subunit beta, mitochondrial O... [more]
ECHB_HUMAN3.758e-2530.68Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADI_PSEA68.372e-2530.843-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AE01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256774 ID=DY256774; Name=DY256774; organism=Citrus clementina; type=EST; length=1241bp
GGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCAT
GGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCC
TCAAAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGAT
GTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGG
ATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACC
CCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGGT
ATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGCA
AGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCAT
CTGGCAAGTTTAAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGAC
CCAAAAACTGGAGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
TCGACCAAACACAACAATTGCAGATCTGGCTAAGCTGAAGCCTGCATTTA
AAAAGGATGGGACGACAACTGCTGGGAATGCTAGCCAGGTCAGTGATGGA
GCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGGTCT
TCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATCCTT
CTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAGTCT
GCAGGTCTTCAGATTGATGATATAATTTTGTTTGAGATAAATGAGGCATT
TGCATCCCAATATGTTTATTGTATTAAGAAACTGGGGCTTTGATCTGAAA
AAGTCAATGTTAATGGAAGTGCAAGGGCTCCTTGGCATCCTCTGGGTGCA
ACAGGTGCACGCCTGTGTTGCAACTCCATTGAATGAAAAGAAACGTCCTG
CCAAAAAATGTCAATTTGGAATGAATCTCATGGTGCTAAGGCCCAGGCAT
GGGGGGCTGCACCAGTTTTCGAAAAAGGAAATTGGGGTTTAAAAAACTAT
CCAATGGCCCAAAGGGTTTCCAACTCCCACCCCCCTTTGTCAAAAGGAAG
CCAAGAAAAAAGCCTTTTTGTTTTTGAAATTCCATCCCCCGGGTTTTTTA
GTAAAAACCCGGGGAATTTGGGTTTTAAATTTACCAAAAATTTTATTTTA
AAAAGGGGGGGGGATCAATTATGTGGGGATATTAATAGTTG
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