DY256791

Overview
NameDY256791
Unique NameDY256791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1319
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: TPC_MOUSE (Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.188e-12
Identity = 49/169 (28.99%), Postives = 70/169 (41.42%), Query Frame = 3
Query:  261 HFGTSGLAVAVATAVTHPLDVLKVRLQMQFVGQKGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAF----GSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMKQSGSIAEMR----------RLISEEGIRALWKGVGP 725
            HF   GL+   AT   HP+DVL+ RL  Q  G+    N +      + K EGP   Y GLTP +     Y GL+   Y   K A DW        T  L  +             T P +++K RLQ+        +  ++R          +++ EEG R  +KG+ P
Sbjct:  121 HFVCGGLSAGTATLTVHPVDVLRTRLAAQ--GEPKIYNNLREAIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYPLDLIKKRLQVGGFEHARSAFGQVRSYRGLLDLTQQVLQEEGTRGFFKGLSP 287          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: MCFX_DICDI (Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.188e-12
Identity = 57/218 (26.15%), Postives = 102/218 (46.79%), Query Frame = 3
Query:  279 LAVAVATAVTHPLDVLKVRLQMQFVGQKG--PLNGMGRLFLQILKKE-GPKSLYLGLTPALTRSILYGGLRLGL--YEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMKQSGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILIRWTPLEEGFHLHLISSAVAGTMSTLITAPVEMVKTRLMLQ 917
            +A  + ++V  PLD +K RLQ Q V   G    NG+   F +++K E G + LY GL+  L   I    L+L +  Y  +++  D ++    +  ++             TNP E++K+R+Q++     SG  A ++ ++SE GI+ L+KG                  Y   K  L      E G    L+    AG+++  ++ P +++KTR+ ++
Sbjct:   29 IAGVIGSSVVFPLDFVKTRLQQQRVSIDGSKQYNGIIDCFKKVIKNEGGVRGLYRGLSSNLIGIIPEKALKLAMNDYFRTRFQGDRSY--IKLWEEVASGGLAGMCQVVATNPMELVKIRMQVSG---LSGKKASLKEVVSELGIKGLYKGTASTLLRDVPFSMIYFSIYGRMKHNLTDQETGEIGLPKILLCGITAGSIAASVSTPFDVIKTRIQVK 241          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: MCFE_DICDI (Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.156e-11
Identity = 60/239 (25.10%), Postives = 107/239 (44.77%), Query Frame = 3
Query:  270 TSGLAVAVATAVTHPLDVLKVRLQMQFVGQ---KGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGST---NILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMKQ--------SGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILIRWTPLEEGFHL----HLISSAVAGTMSTLITAPVEMVKTRLMLQQKSKK 932
            TSGL   +A ++ HP+D ++ R+Q++ VG+   KG  N +     QI+K EG   LY G     T ++    L    YE SK      +G     + +               +  P +++K RLQ+ ++ ++         GS    + ++ EEGIR L++G  P               Y++ K  +      E+  +L     L S   AG  +  +T P++++KTR+ +Q+ ++K
Sbjct:   17 TSGL---LADSIMHPVDTVRARVQIEKVGKSQYKGTFNALN----QIIKNEGVSYLYKGFPIVATATVPAHALYFLGYEYSKQWVTDRYGKKWGESTITHFSAGFVADALGSLIWVPMDIIKQRLQVQTNTQKLNPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYGPFVGIYFSVYEKCKSTISSLLSKEKDQYLPIPYQLGSGFFAGAFAAAVTCPLDVIKTRIQVQRSTEK 248          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: S2540_MOUSE (Solute carrier family 25 member 40 OS=Mus musculus GN=Slc25a40 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.509e-11
Identity = 72/269 (26.77%), Postives = 107/269 (39.78%), Query Frame = 3
Query:  282 AVAVATAVTHPLDVLKVRLQMQ---------FVGQKG-------------------PLNGMGRL--FLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNS-SMKQSGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILIRWTPL-EEGFHLHLISSAVAGTMSTLITAPVEMVKTRLMLQQKSKKVGSYKNGFHWANQVCVYRRP 992
            AV  +  VT PLDV+K+RLQ Q         F+   G                   P N  G L  FL+IL+ EG KSL+ GL P L  +I    +    YE          G     + I            + +P E+++ ++Q    S K+      MR  +SE+G  +LWKG  P               Y+  KR L   + L E  F ++  S A++G+ + + T P ++VKT+   Q              W N+ C +  P
Sbjct:   27 AVLTSLMVT-PLDVVKIRLQAQNNPFPKGKCFLYSNGLMDHMCVCEEESKKAWYKKPGNFRGTLDAFLKILRNEGIKSLWSGLPPTLVMAIPATVIYFTCYEQLSAFLKTKLGENETRIPIVAGVVARFGAVTVISPLELIRTKVQSKKFSYKELYQFVSMR--VSEDGWISLWKGWAPTILRDVPFSAMYWYNYENLKRWLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQL-------------WTNEYCKFPAP 279          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: TPC1_PICST (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia stipitis GN=TPC1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.971e-11
Identity = 62/230 (26.96%), Postives = 99/230 (43.04%), Query Frame = 3
Query:  288 AVATAVTHPLDVLKVRLQMQFVGQKGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEP-----SKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMKQSGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRIL-IRWTPLEEGFHLHLISSAVAGTMSTLITAPVEMVKTRL----MLQQKSKKVGSYK 947
            AVA AVT PLD +K+RLQ+Q    +  ++ +  +   +LK EG  +L+ G  PA    +LYG  +   Y       S  +    F   +    +            +T P ++L+ RL  NS  K        R +IS EG   L+ G+ P               Y+  +  L  R  P +EG     I   +AG  S  IT P++ ++ R     +L   +K+VG+++
Sbjct:   30 AVARAVTAPLDTIKIRLQLQRSAFRSRVS-VTTVVKDLLKNEGAIALWKGNVPAEILYVLYGAAQFTTYSSISRWLSHLSDTSGFNLPSSAHSLVSGTGAGVVSTLVTYPFDLLRTRLAANSEKKLLSMSGTAREIISSEGFTGLFAGIKPAMLSISTTTGLMFWSYELVRETLGDRDIPFKEG-----ICGFIAGATSKGITFPLDTIRKRTQMYKILYNSAKRVGAFR 253          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.363e-11
Identity = 58/248 (23.39%), Postives = 108/248 (43.55%), Query Frame = 3
Query:  255 VHHFGTSGLAVAVATAVTHPLDVLKVRLQMQ--FVGQKGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNS-----SMKQSGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILIRWTPLEEGFHLHL------ISSAVAGTMSTLITAPVEMVKTRLMLQQKSKKVGSYKNGFH 959
            +++F    +A  +   V +P+D +K R+Q Q      K  ++ +    L+I+ +EG K LY GL P L        ++L + +  +       G  ++  +I             TNP E++K+RLQ+ S     +++Q+   A   +++ + G+R L+ GV                 Y   K+ L  + P ++     L       + A+AG  +  +T P +++KTRL +  + K    Y   FH
Sbjct:  531 LYNFSLGSIAGCIGATVVYPIDFIKTRMQAQRSLAQYKNSIDCL----LKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTDKNGKLSLFPEIISGASAGACQVIFTNPLEIVKIRLQVQSDYVGENIQQANETAT--QIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPNDKTKRNRLKTWELLTAGAIAGMPAAFLTTPFDVIKTRLQIDPR-KGETKYNGIFH 771          
BLAST of DY256791 vs. ExPASy Swiss-Prot
Match: AGC1_ASHGO (Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii GN=AGC1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.784e-11
Identity = 54/233 (23.18%), Postives = 98/233 (42.06%), Query Frame = 3
Query:  255 VHHFGTSGLAVAVATAVTHPLDVLKVRLQMQ--FVGQKGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSSMKQSGSIAEMRRL--ISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILIRWTPLEEGFHLHL------ISSAVAGTMSTLITAPVEMVKTRLMLQQK 923
            +++F    +A  +   V +P+D++K R+Q Q  F   K  ++ +    L+IL KEG + LY GL P L        ++L + +  +       G  ++  +I             TNP E++K+RLQ+ S      +   +  +  I   G+  L++G G                Y   K  +  + P +      L      +S  +AG  +  +T P +++KTRL +  K
Sbjct:  524 IYNFTLGSVAGCIGAMVVYPIDMVKTRMQAQRDFSKYKNSIDCL----LKILSKEGVRGLYSGLGPQLIGVAPEKAIKLTVNDHMRATLAGRDGKLSLPCEIISGATAGACQVVFTNPLEIVKIRLQVKSDYVADAARNSVNAISVIKNLGLIGLYRGAGACLLRDIPFSAIYFPTYAHIKSNVFNFDPKDSDKRNKLNTWQLLVSGGLAGMPAAFLTTPFDVIKTRLQIDPK 752          
The following BLAST results are available for this feature:
BLAST of DY256791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
TPC_MOUSE5.188e-1228.99Mitochondrial thiamine pyrophosphate carrier OS=Mu... [more]
MCFX_DICDI5.188e-1226.15Mitochondrial substrate carrier family protein X O... [more]
MCFE_DICDI1.156e-1125.10Mitochondrial substrate carrier family protein E O... [more]
S2540_MOUSE1.509e-1126.77Solute carrier family 25 member 40 OS=Mus musculus... [more]
TPC1_PICST1.971e-1126.96Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
AGC1_YEAST3.363e-1123.39Mitochondrial aspartate-glutamate transporter AGC1... [more]
AGC1_ASHGO9.784e-1123.18Mitochondrial aspartate-glutamate transporter AGC1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2AG10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256791 ID=DY256791; Name=DY256791; organism=Citrus clementina; type=EST; length=1319bp
GGGTTAACAGAAAACTAATATAGGAAATGCACAAGCTATCACCTGCGATT
CTTTGCAACTGAAATCGGGTATGACGTGTCTTATGTGCGGCTATTTTCCC
TCCTCCTAACGCCCAATCTTTTCTCCGACAGTAAATTGCCCGAACTAATC
AAAACATGAGCGTGAATTCTTCGGCTCCGCTTTCAGGACCAGTGGCTGTT
GAAGTAAAAGTTGGTGAGAAGCAGAAGAATTGGTCGACGACGCCATCCCA
TATTGTTCATCACTTTGGTACCAGCGGACTGGCTGTTGCAGTTGCCACTG
CTGTCACTCATCCTCTAGATGTACTCAAAGTCAGGCTGCAAATGCAATTT
GTTGGTCAGAAAGGTCCCTTGAATGGAATGGGACGATTATTTCTCCAAAT
ATTGAAAAAAGAAGGTCCAAAGTCTTTGTATCTGGGATTGACTCCTGCTC
TGACAAGGTCAATTTTGTATGGTGGTCTACGTTTAGGCTTGTATGAGCCC
TCAAAGTATGCATGTGATTGGGCATTCGGGTCCACCAATATCTTGGTTAA
AATTGCATCTGGAGCATTTGCTGGTGCCACTGCTACTGCACTTACCAATC
CAACTGAAGTCCTGAAGGTGCGGCTGCAGATGAATTCCAGCATGAAACAA
AGTGGATCGATTGCAGAAATGCGAAGACTTATTTCTGAGGAAGGAATAAG
AGCTCTATGGAAGGGGGTTGGTCCTGCTATGGCAAGAGCTGCTGCTTTAA
CTGCCTCACAGCTAGCAACATATGATGAATCCAAGCGGATATTGATCAGG
TGGACGCCTCTTGAAGAAGGATTTCATTTACATCTCATCTCAAGTGCAGT
CGCTGGGACCATGAGTACCCTCATAACTGCACCTGTGGAAATGGTTAAAA
CCCGTCTAATGTTGCAACAAAAATCTAAAAAAGTTGGAAGCTATAAAAAT
GGATTTCATTGGGCAAACCAAGTTTGTGTGTACCGAAGGCCCCCGCCCCA
TTTTAAAAGGGGGGCTTTGCCATTTTTTGCAGAATGGGGTCCACAAAGTT
AAATTTCCTTTTTTCCTTTGGAAAAAACTAAAGGGACTTGGGAGGATTAA
TTGCAATTCTATTTTGGGGGGTTGTCAAATTTTAAATTTTTGCAAAAATT
TTAACCCAAAAAAAATTTTGTTTTATAAAACCCCAAAGGGAGTTTTTCCT
TCTTTTTCCCCCCCCTCCTGTATACACAAAAAAAAGGGGGGAAAAAATAT
TTTTTTTTTATTTTATTTTTTTTTTTTTTTATTTTTATTTTTTTTTCCTC
CCGGGGGGGGGGGTTTTTT
back to top