DY256793

Overview
NameDY256793
Unique NameDY256793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.469e-26
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.469e-26
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 519
            +G+A ++AS N+T I +TD++G E + R +GGM VKADR++ SPYAAMLAA   +T   + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTPIP DS
Sbjct:    9 WGIARVYASQNNTLITITDITGAEIISRASGGMVVKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDS 120          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.469e-26
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  181 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            ++GVAHI  SFN+T I VTDL+G ET+ + +GGM VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    5 IWGVAHIKCSFNNTIITVTDLTGAETIAKSSGGMVVKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  157 PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            P     +   G+AHI++S+N+T IH+TDL+G ET+   +GG+ V ADR ESSP+AAM AA  V    +  G T  HI++RA            AQ+A+RALAR G +IGRI+DVTPIP D+T
Sbjct:   66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.755e-25
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            +G+A+++ASFN+T I VTD++G ET+V+ +GG  VK +RDE+SPYAAM  A+ V+   K+ GI  +H+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIANVYASFNNTIITVTDMTGAETIVKSSGGTVVKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.699e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.016e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.016e-25
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 519
            +G+A+I+AS N+T I +TDL+G ET+ R++GG  VKADRD+ SPYAAM+AA   +      GI A+H+K+R             A +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:    9 WGIAYIYASSNNTMIIITDLTGSETVARVSGGQVVKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            G+AHI+AS N+T I VTD +G ET+ + +GGM VK DRDE+SPYAAM AA  VS + +E  IT L I++RA            AQSA+RAL+R+G KI RIE+VTPIP D T
Sbjct:    5 GIAHIYASQNNTIILVTDPTGAETIAKSSGGMVVKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGT 116          
The following BLAST results are available for this feature:
BLAST of DY256793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
RS11_THEVO9.469e-2656.2530S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_SULTO9.469e-2653.5730S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_METBU9.469e-2651.7530S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_CENSY1.237e-2548.3630S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]
RS11_METAC2.109e-2551.3330S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_NATPD2.755e-2549.5630S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_METMA4.699e-2550.4430S ribosomal protein S11P OS=Methanosarcina mazei... [more]
RS11_METBF8.016e-2550.4430S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_CALMQ8.016e-2551.7930S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_PICTO2.332e-2455.3630S ribosomal protein S11P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AH01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256793 ID=DY256793; Name=DY256793; organism=Citrus clementina; type=EST; length=829bp
GATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATTTTC
CTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTTTCG
CAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTGACT
CTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCACAT
CTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAGGCA
GAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGACCGA
GATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTCAAC
CAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTGCTA
CTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCTCTT
CGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGTGAC
CCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAAGAA
GGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGTCTT
GTTTTATGCGGGCATTCTGAATGGGACAATTGTTCCTTAAAGTTAGTTGA
AGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTATTA
AAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGTGGCCTTGAGAG
CATATGGCATTACTGGTGTCTTGCATTGCGTGGTATGTCCTTTTATTAAT
TTTGAAATTATGATGTGTCTTTGAGACTA
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