DY256793

Overview
NameDY256793
Unique NameDY256793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 516
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 516
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   10 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_NANEQ (30S ribosomal protein S11P OS=Nanoarchaeum equitans GN=rps11p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  184 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRA-XXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 516
            +GVAHI++S N+T IH+TD++G ET+   +GGM V ADR E SP AA+LAA+  +   KE GIT LHIK+RA             A +A++ LAR G+KIG IEDVTP P D
Sbjct:    6 WGVAHIYSSENNTIIHITDITGAETIAVGSGGMVVNADRLEGSPTAAILAAKRAAALAKERGITGLHIKVRAPGGHNGPWIPGPGASAAIKTLAREGLKIGIIEDVTPTPHD 117          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) OS=Nicotiana tabacum GN=RPS14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  358 KELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 522
            KELGI ALHIKLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 KELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 55          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_CAUSK (30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_PELCD (30S ribosomal protein S11 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            G+AHI A+FN+T + +TD++G        G M  K  R +S+P+AA +AA+D + +  E G+ ++ ++++              +SALRAL+ +G+ I  I+DVTPIP
Sbjct:   21 GIAHIQATFNNTIVTITDIAGNVISWSTCGTMNFKGSR-KSTPFAAQIAAEDAAKKAMEHGLRSVEVRVKG--------PGSGRESALRALSSAGLNISVIKDVTPIP 119          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_CAUCR (30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_CAUCN (30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_AZOC5 (30S ribosomal protein S11 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  187 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA LAA+D + +  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQLAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117          
BLAST of DY256793 vs. ExPASy Swiss-Prot
Match: RS11_METS4 (30S ribosomal protein S11 OS=Methylobacterium sp. (strain 4-46) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  181 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 510
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of DY256793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
RS11_PYRAR7.503e-2349.5530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_PYRAE9.799e-2349.5530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]
RS11_NANEQ2.183e-2251.7930S ribosomal protein S11P OS=Nanoarchaeum equitan... [more]
RS14_TOBAC8.314e-1476.3640S ribosomal protein S14 (Fragment) OS=Nicotiana ... [more]
RS11_CAUSK2.048e-1240.7430S ribosomal protein S11 OS=Caulobacter sp. (stra... [more]
RS11_PELCD2.675e-1236.1130S ribosomal protein S11 OS=Pelobacter carbinolic... [more]
RS11_CAUCR4.562e-1240.7430S ribosomal protein S11 OS=Caulobacter crescentu... [more]
RS11_CAUCN4.562e-1240.7430S ribosomal protein S11 OS=Caulobacter crescentu... [more]
RS11_AZOC57.782e-1239.8130S ribosomal protein S11 OS=Azorhizobium caulinod... [more]
RS11_METS41.016e-1139.0930S ribosomal protein S11 OS=Methylobacterium sp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AH01ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256793 ID=DY256793; Name=DY256793; organism=Citrus clementina; type=EST; length=829bp
GATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATTTTC
CTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTTTCG
CAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTGACT
CTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCACAT
CTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAGGCA
GAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGACCGA
GATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTCAAC
CAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTGCTA
CTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCTCTT
CGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGTGAC
CCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAAGAA
GGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGTCTT
GTTTTATGCGGGCATTCTGAATGGGACAATTGTTCCTTAAAGTTAGTTGA
AGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTATTA
AAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGTGGCCTTGAGAG
CATATGGCATTACTGGTGTCTTGCATTGCGTGGTATGTCCTTTTATTAAT
TTTGAAATTATGATGTGTCTTTGAGACTA
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