DY256946

Overview
NameDY256946
Unique NameDY256946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.293e-17
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  347 LAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.336e-17
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 335
            V G +G+FELNV  P++A  LLHS++LL + S       +   + N+ ++S+ L  + +LVT+LNP IGY  AA +AK+A++EG  + D AL+   L+    + L+ PEK+
Sbjct:  343 VAGQSGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQGKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.251e-16
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 293
            GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  350 GGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.251e-16
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 293
            GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  350 GGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 39/109 (35.78%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            G  ELNV +P++   LL S+ ++ +   SF  NC++GI+AN +R+ + + +S  ++T++NP +GY+ AA +A++A   G +++D  L+  VL  EE D ++ P +M  P
Sbjct:  357 GQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKRMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKP 465          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 335
            G + G  +LN++KP++A   L S  +L +ASA+F +  V  ++AN       +  S+ L T+LNP IGYD A+ VAK A KEG T+ +  ++ G L+  E  +++ PE M
Sbjct:  350 GAAEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEANEAACEAQVERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGM 459          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN  R  +L+  S+ LVT+LNP IGY+NA  +A+ A + G  + +   + G+L+    D+++ PE MI P
Sbjct:  358 MAAEGGQLQLNVMEPLIAFKIFDSIRLLQRAMDMLREHCIVGITANEARCRELVEHSIGLVTALNPYIGYENATRIARIALESGRGVLELVREEGLLDDAMLDDILRPENMIAP 471          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN ER  +L+  S+ LVT+LNP IGY+N+  +AK A + G  + +   +  +L+     ++++PE MI P
Sbjct:  354 LAAEGGQLQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCITGITANVERCHELVEHSIGLVTALNPYIGYENSTRIAKTALESGRGVLELVREEKLLDEATLADILLPENMIAP 467          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_CORGL (Fumarate hydratase class II OS=Corynebacterium glutamicum GN=fumC PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.998e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEE 305
            G+ G FELNVF P++A  +L S RLL + S  F    V GI+ N   + +L   S  +VT LN  IGY+ AA VAK A  EG T++   + LG+++ E+
Sbjct:  351 GTQGQFELNVFIPVMARNVLESARLLANTSRVFATRLVDGIEPNEAHMKELAESSPSIVTPLNSAIGYEAAAKVAKTALAEGKTIRQTVIDLGLVDGEK 449          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_COREF (Fumarate hydratase class II OS=Corynebacterium efficiens GN=fumC PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEE 305
            GS G FELNVF P++A  +L S RLL + +  F    V GI  N E + +L   S  +VT LN  IGY+ AA VAK A  EG T++   + +G ++ E+
Sbjct:  351 GSQGQFELNVFIPVMARNVLESARLLANTARVFATRLVDGIVPNEEHMKQLAESSPSIVTPLNSAIGYEAAAKVAKAALAEGKTIRQTVIDMGFVDGEK 449          
The following BLAST results are available for this feature:
BLAST of DY256946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ASPA_HELPJ3.293e-1738.60Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
FUMC1_PSEAE7.336e-1739.64Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
FUMC_MYCTU1.251e-1644.79Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO1.251e-1644.79Fumarate hydratase class II OS=Mycobacterium bovis... [more]
ASPA_BACSU2.788e-1635.78Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_HALSA2.360e-1538.18Fumarate hydratase class II OS=Halobacterium salin... [more]
ASPA_PSEFL3.082e-1536.84Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]
ASPA_PSEAE8.968e-1535.96Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
FUMC_CORGL1.998e-1442.42Fumarate hydratase class II OS=Corynebacterium glu... [more]
FUMC_COREF3.408e-1442.42Fumarate hydratase class II OS=Corynebacterium eff... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256946 ID=DY256946; Name=DY256946; organism=Citrus clementina; type=EST; length=788bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
AAAAACAAAGAAAGGGGCACCAAAAAAAAAACTATATTCTTTGAGGTTTT
CCCAGGAGGAGGCTTCATTGATATGTCATTTCACGTGGTTGACAAATAAC
CGATTGGTAAGCCAAACAAGGGGAAAACCTCCCTCATTTTTTTGGGCCGA
CATGGGAATAAAAAAATGGTTAAAACCAAAAAAAAATGAAAAAAAATTTT
AAAGGCTAAAGGGACCCTTAAAATGAACCCCCCCAAATTTTTTTTTAATT
GAAAAAAATTTTTTTCAAAAAAAACATTATTTTGGAAG
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