DY257714

Overview
NameDY257714
Unique NameDY257714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.597e-16
Identity = 65/240 (27.08%), Postives = 109/240 (45.42%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-------LKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLI 886
            + YFR  G ++  AL   +L+++ F+ +FYK +LG  ++  D+   D E+ K LQ +               DN             I DL L+ T     D         LKPG  ++ +   N  EY+ LV +  +   I  Q+  F  GF+     + +Q+F  +EL+ LL G  E+ +     ++ ++  GY      I    E++ E T +++    QFVTG+ R+P GG A ++
Sbjct:  673 LNYFRFAGEILGLALYHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWI--------------LDN------------DISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIM 885          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.086e-16
Identity = 68/233 (29.18%), Postives = 110/233 (47.21%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + YF+ +GRV   A+  G+LLD  F   FYK++L   + LHD+   D+E+   L+ +               +N    +DLRF         +D  L G    + LK G   + +   N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +GY+     I    + +     +++    QFVTG  R+P  G A L
Sbjct:  619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWI--------------LENDPTELDLRF--------IIDEELFGQTHQHELKTGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNGYSMNHQVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAEL 828          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.725e-16
Identity = 69/233 (29.61%), Postives = 110/233 (47.21%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + YF+ +GRV   A+  G+LLD  F   FYK++L   + LHD+   D+E+   L+ +               +N    +DLRF         +D  L G    + LK G   V +   N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +GY+     I    + +     +++    QFVTG  R+P  G A L
Sbjct:  619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWI--------------LENDPTELDLRF--------IIDEELFGQTHQHELKTGGSEVVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNGYSLNHQVIHWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL 828          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.559e-16
Identity = 66/233 (28.33%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + LKP    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG  ++ +     +H  + +GY    P I    + +     +++    QFVTG  R+P  G A L
Sbjct:  736 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL 945          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.559e-16
Identity = 66/233 (28.33%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + LKP    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG  ++ +     +H  + +GY    P I    + +     +++    QFVTG  R+P  G A L
Sbjct:  707 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL 916          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.928e-16
Identity = 67/247 (27.13%), Postives = 109/247 (44.13%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIE--DLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSSTAP 928
            E + L G V+  A+ +  +LDL F  AFYK + G  L ++D +    E G  +  L ++    +  E + +   E     RF  + I    LC D +             + V   N  EY  L +D  +   I    E+FR GF  V +  S ++F   EL+ L+CG  E   + + L    ++  G+   SP +    EI+ E    QQR    FVTG+ R+P  G+  +  +++ +R  +   P
Sbjct:  570 ELYYLFGVVLGLAIYNSTILDLKFPRAFYKKICGEVLSVNDFLELYPETGTNM--LKMLEYDGEDFEDIFALTFETCFPDRFDESKIHYRQLCPDGST------------QAVTRENKHEYFRLWMDFYLNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTIPFRISRIRSGADRLP 802          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.035e-15
Identity = 65/233 (27.90%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + L+P    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG  ++ +     +H  + +GY    P I    + +     +++    QFVTG  R+P  G A L
Sbjct:  691 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLEPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL 900          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.766e-15
Identity = 71/249 (28.51%), Postives = 119/249 (47.79%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP-----GYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSST 922
            F L+G ++  A+ +  +LD+ F    Y+ ++G +    D           L + H ++   Q L+ +          L + G+  +D+ + F +      G P  Y LK   + + I N   +E++    D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T
Sbjct:  623 FTLIG-ILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRD-----------LGDSHPVLY--QSLKDL----------LEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT 844          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.495e-14
Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 2
Query:  200 YFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP--GYPDYI---LKPGDENVDINNLEE--YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD--HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 871
            YFR +GRVM  A+   R LD+ F   FYK +L   L L D+   D  + + L+ +                     VD        E LCL+F++    + + +   L P   N+ +NN  +  Y+  + +  + T    Q  A + G N++   + LQIF  +ELD LL G+R++     + +  +F     YT     ++   E++ E++P+++    QF TG  RLP  G
Sbjct:  406 YFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDEVYYESLKWIK-----------------NNDVD--------ESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNGKRDI----DVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSG 609          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.953e-14
Identity = 74/265 (27.92%), Postives = 110/265 (41.51%), Query Frame = 2
Query:  152 PSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSSTA 925
            PSA   E G     I+    LGR++ KAL +G LLD  FS  F + +LG    + ++   D E  + L  +       +H +                   +++LCLDFT+     G    I LKPG  D +V   N  +YI  + D  +   I+    AF  G   +     L++F  HE + LL G     +   L  + K+  GY+  S  I    E+M  F P ++    +FVT   R P  G   L P   I +    T+
Sbjct:  856 PSARHLENG-----IQMIEFLGRIVGKALYEGILLDYSFSHVFIQKLLGRYSFIDELSGLDPELYRNLMYV-------KHYDG-----------------DLKELCLDFTVTEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVPFSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTS 1091          
The following BLAST results are available for this feature:
BLAST of DY257714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HACE1_XENLA1.597e-1627.08E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
NEDD4_MOUSE2.086e-1629.18E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]
NEDD4_RAT2.725e-1629.61E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
NED4L_MOUSE3.559e-1628.33E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN3.559e-1628.33E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
HUL4_ASHGO7.928e-1627.13Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
NED4L_PONAB1.035e-1527.90E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]
UBE3A_MOUSE1.766e-1528.51Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
PUB2_SCHPO1.495e-1427.47E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
UPL7_ARATH1.953e-1427.92E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257714 ID=DY257714; Name=DY257714; organism=Citrus clementina; type=EST; length=1343bp
GAGAGTCGGACTTGCAATGTGGAGGTCAAATTCCTCATCAGAGAATCCGC
CAATGGAAATTGATGGGGATGAAGGCAAAAGTGGTAAAACCAGTAATATA
TCTGGAGATCTAGTTCATGCTCCTCTTGGGTTGTTCCCTCGACCTTGGCC
TCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAGTAAAGTTATTGAAT
ACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTCTTCAAGATGGGAGG
CTTTTAGACCTGCCATTTTCAACAGCATTCTACAAACTTGTTCTTGGTCA
CGAGCTTGATTTGCATGATATTATTCCCTTTGATGCCGAGTTTGGGAAGA
TTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAACAACATTTAGAATCA
ATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGGGGC
CCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGACT
ATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGAA
TACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCGGCA
AATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCAT
TACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGA
GAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGG
ATACACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAG
AATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCA
CCTCGTCTTCCACCGGGTGGGTTGGCGGTGCTGATTCCCAAGCTTACCAT
TGTCAGAAAGCATTCTTCAACTGCCCCTAATACACCATCCAATGGAAACG
GGGCCTTCGGAATCAGCGGAAGAATGACCTGGCCAAGTGTCATGACCTTG
GGCCAATTACCTGAAACCTTCCTCCCTTACTCTACCAAGGGAAATTATGT
ATCAAAAAAATTGGGTTTTAGCCAAAAAGCCAAAGGGGGAGGAAATCTTT
TTAATTTTTTCTTGGATTTTCCCAAAAACTTACCCCAAAGGGGACCTTTT
TGTAATTTTAAAATTTATTGTGTTCTTTCACAAGTCAATTTTCCCCTTTC
CCCCGGGGGGGAAATTATTTTTTCCTTTTTTTTAAAAAAAAAGAAACCCA
CTAATTTTTTTTTTCAAACATAAAAAAAAAAAAGGGGGCGCGTGCTTTTT
TTTTTTTCCCCGCCCCCCCTCCCCTTTTTTTTATATTTTCTCA
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