DY257737

Overview
NameDY257737
Unique NameDY257737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.431e-40
Identity = 78/143 (54.55%), Postives = 97/143 (67.83%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  174 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFG 314          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.431e-40
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLI 440
            +PC     YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS  D  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+ PG NLDCY+Q+ F  +
Sbjct:  172 WPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLV--SNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSFASV 314          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.441e-40
Identity = 79/151 (52.32%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  181 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.438e-40
Identity = 80/151 (52.98%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    KYYGRGPIQ+++NYNY  C                 AT+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W PSA D  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG N+DC +Q+ F   L+  +M
Sbjct:  186 WPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLV--ATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.275e-40
Identity = 78/151 (51.66%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS+ D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  176 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.275e-40
Identity = 79/151 (52.32%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  170 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.211e-39
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KY+GRGPIQ++ NYNY  C                 ATD ++SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  168 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.582e-39
Identity = 77/143 (53.85%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  170 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.582e-39
Identity = 76/142 (53.52%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT +W PSA+D  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+Q+P+
Sbjct:  178 WPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.525e-39
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPG+G+ TNIINGG+ECG G ++ V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  ++
Sbjct:  180 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
The following BLAST results are available for this feature:
BLAST of DY257737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SOLLC1.431e-4054.55Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_BRANA1.431e-4051.72Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC2.441e-4052.32Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_TOBAC5.438e-4052.98Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_TOBAC9.275e-4051.66Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_SOLTU9.275e-4052.32Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.211e-3953.15Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.582e-3953.85Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ1.582e-3953.52Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU3.525e-3950.33Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257737 ID=DY257737; Name=DY257737; organism=Citrus clementina; type=EST; length=633bp
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCTAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCAC
GATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAA
AGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAG
TTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCCAACATGGA
TCAATGAGTCTTCTCCNAANAAAAAAAAAAAAA
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