DY257737

Overview
NameDY257737
Unique NameDY257737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.852e-39
Identity = 73/142 (51.41%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC    KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q PKPSCH V+T +W P+ ND  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  182 WPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.026e-38
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC    KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q  KPS H+VIT  W PS  D  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  190 WPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 76/143 (53.15%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    9 NYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            ++PC    KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q  KPS H+VIT  W PSA D +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC +Q+ F
Sbjct:  179 DWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q PKPSCH VIT  W PS  D +AGRLPG+G+ TNIINGG+ECG G    V++RIGF+  +C    +  G NLDC +Q+PFG
Sbjct:  166 WPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLV--ATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFG 306          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   12 YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  178 WPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.681e-38
Identity = 74/143 (51.75%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q PKPSCH V T +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY Q+PFG
Sbjct:  185 WPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.934e-37
Identity = 74/136 (54.41%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   27 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D  A R+PGYG+ TNIINGGIECG+G NDAV +RIG++  +CG   + PG NLDCY+Q+ FG
Sbjct:  118 RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.934e-37
Identity = 71/135 (52.59%), Postives = 87/135 (64.44%), Query Frame = 3
Query:   27 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC +G N AV +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.526e-37
Identity = 75/142 (52.82%), Postives = 92/142 (64.79%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC    +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  126 WPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.309e-37
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ PKPS H+VIT  W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG NLDC +Q+PFG
Sbjct:  106 WPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLV--ANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
The following BLAST results are available for this feature:
BLAST of DY257737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_ORYSJ7.852e-3951.41Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ1.026e-3854.23Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA8.681e-3853.15Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_VITVI8.681e-3852.45Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_HORVU8.681e-3854.2326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI12_ORYSJ8.681e-3851.75Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC1.934e-3754.41Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SOLCI1.934e-3752.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIC_SECCE2.526e-3752.82Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC4.309e-3751.05Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257737 ID=DY257737; Name=DY257737; organism=Citrus clementina; type=EST; length=633bp
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCTAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCAC
GATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAA
AGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAG
TTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCCAACATGGA
TCAATGAGTCTTCTCCNAANAAAAAAAAAAAAA
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