DY257737

Overview
NameDY257737
Unique NameDY257737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.774e-33
Identity = 71/154 (46.10%), Postives = 88/154 (57.14%), Query Frame = 3
Query:    9 NYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF---GLILMARSM 458
            +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC        +NRI ++  +C    + PG NL C +Q+ F   GL+ M  +M
Sbjct:  165 SYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKV--ATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGLLKMVGTM 316          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.586e-31
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   12 YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC    +  V NRIGF+  +C   G+  G NLDC HQQPF
Sbjct:  151 WPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 62/134 (46.27%), Postives = 81/134 (60.45%), Query Frame = 3
Query:   30 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG G    V +RIG++             NLDCY+Q+PF
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPF 199          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    3 NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 455
            N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  188 NARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    3 NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 455
            N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  188 NARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.011e-18
Identity = 52/136 (38.24%), Postives = 64/136 (47.06%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PG NL C
Sbjct:  176 YPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.641e-18
Identity = 49/139 (35.25%), Postives = 67/139 (48.20%), Query Frame = 3
Query:    3 NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            N  +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  173 NKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 3
Query:    3 NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM       + H+V++                G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  170 NKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.476e-16
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDA-VRNRIGFFSTFCGKFGIQPGYNLDC 413
            YPC    +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+     +     VI D   P+          G+G T  IINGG EC  G N A +  R+G++  +C + G+ PG NL C
Sbjct:  134 YPCNPNKEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECD-GHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 3
Query:    3 NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            N  YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +               +P  N        G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  154 NRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELV--SSNPTVAFRTGLWFWMNSV--------------RPVLNQ-------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
The following BLAST results are available for this feature:
BLAST of DY257737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_POPTR3.774e-3346.10Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI10_ORYSJ1.586e-3145.07Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA8.702e-3046.27Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ1.257e-2842.86Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.641e-2842.86Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_BETVU2.011e-1838.24Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ7.641e-1835.25Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ8.448e-1733.81Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA5.476e-1635.77Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA7.151e-1635.25Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257737 ID=DY257737; Name=DY257737; organism=Citrus clementina; type=EST; length=633bp
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCTAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCAC
GATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAA
AGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAG
TTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCCAACATGGA
TCAATGAGTCTTCTCCNAANAAAAAAAAAAAAA
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