DY257737

Overview
NameDY257737
Unique NameDY257737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:468..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.635e-15
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 3
Query:    3 NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 413
            N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  165 NRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.054e-15
Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 413
            +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  157 WPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14
Identity = 45/136 (33.09%), Postives = 64/136 (47.06%), Query Frame = 3
Query:   12 YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W        + H+                   G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  157 WPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 3
Query:    9 NYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWND-AVR-NRIGFFSTFCGKFGIQPGYNL 407
            ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++      +AN   A R+P  G+  NII+       G +D AVR + IGF+  +C   G+  G++L
Sbjct:  227 DWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISR----AFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 3
Query:   12 YPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 413
            YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ +++ +C + G+  G NL C
Sbjct:  158 YPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  180 MTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 317
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY257737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE4.635e-1534.29Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE6.054e-1535.04Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ1.761e-1433.09Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI3.005e-1436.50Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_PHAVU1.262e-1230.88Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.812e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257737 ID=DY257737; Name=DY257737; organism=Citrus clementina; type=EST; length=633bp
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCTAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCAC
GATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAA
AGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAG
TTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCCAACATGGA
TCAATGAGTCTTCTCCNAANAAAAAAAAAAAAA
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