DY257739

Overview
NameDY257739
Unique NameDY257739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHIGA (Nod factor export ATP-binding protein I OS=Rhizobium galegae GN=nodI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.218e-18
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLE 564
            VR    SGGMKRRL++A AL+ DP+L+ILDEPTTG+DP  R  +W+ ++    +G+ I+LTTH M+EA+ + DR+ ++  GR+   G  + L        ++ V   G N  +  L     +  PH D ++   ET               Y +  D+     + F  L+  E+   + D+ + LT  E
Sbjct:  175 VRVSDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERLRSLLIRGKTILLTTHMMDEAERMCDRLCVLEGGRMIAEGPPLSLIEDIIGCPVIEV--YGGNPDELSL-----IVRPHVDRIETSGET------------LFCYTVNSDQVRAKLREFPSLRLLERPANLEDVFLRLTGRE 344          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: DRRA_STRPE (Daunorubicin resistance ATP-binding protein drrA OS=Streptomyces peucetius GN=drrA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.218e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   13 SYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFI 300
            +YSGGM+RRL +A +++  P L+ LDEPTTG+DP +R  VWDI++     G  ++LTT  ++EAD L+DRIA++  GR+   GT+  LKS  G+  +
Sbjct:  139 TYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIVRALVDAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGELKSSLGSNVL 235          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YFIL_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiL OS=Bacillus subtilis GN=yfiL PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.452e-17
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   13 SYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK-GRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSN 327
            ++SGGMKRR+++  AL+  P+L+I+DEPT G+DP +R H+ + ++   + G  +I T+H MEE + L DRI I+ +G +  IGT   L S+ G   I+ +  +G N
Sbjct:  132 TFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTDLCSRLGGDTIIQLTVSGIN 237          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHIS3 (Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.452e-17
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R G  SGGMKRRL++A ALI DP+L+++DEPTTG+DP  R  +W+ ++    +G+ IILTTH MEEA+ L DR+ ++  GR
Sbjct:  133 RVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGKTIILTTHFMEEAERLCDRLCVLEHGR 213          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHIL3 (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nodI PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.183e-17
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R    SGGMKRRL++A ALI DP+L+ILDEPTTG+DP  R  +W+ ++    +G+ I+LTTH MEEA+ L DR+ ++  GR
Sbjct:  140 RVADLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEEAERLCDRLCVLEAGR 220          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI2_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.183e-17
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R    SGGMKRRL++A ALI DP+L+ILDEPTTG+DP  R  +W+ ++    +G+ I+LTTH MEEA+ L DR+ ++  GR
Sbjct:  164 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEEAERLCDRLCVLEAGR 244          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHILV (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae GN=nodI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.463e-17
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R    SGGMKRRL++A ALI DP+L+ILDEPTTG+DP  R  +W+ ++    +G+ I+LTTH MEEA+ L DR+ ++  GR
Sbjct:  140 RVADLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEEAERLCDRLCVLEAGR 220          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHIEC (Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 7.135e-17
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R    SGGMKRRL++A ALI DP+L+++DEPTTG+DP  R  +W+ ++    +G+ IILTTH MEEA+ L DR+ ++  GR
Sbjct:  145 RVSELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTRGKTIILTTHFMEEAERLCDRLCVLEGGR 225          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RHILO (Nod factor export ATP-binding protein I OS=Rhizobium loti GN=nodI PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 9.318e-17
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            R    SGGMKR L++A ALI DP+L+++DEPTTG+DP  R  +W+ ++    +G+ IILTTH MEEA+ L DR+ ++ KGR
Sbjct:  169 RVSELSGGMKRCLTMARALINDPQLIVMDEPTTGLDPHARHLIWERLRALLARGKTIILTTHFMEEAERLCDRLCVLEKGR 249          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: FLQE1_MYCTU (Fluoroquinolones export ATP-binding protein Rv2688c/MT2762 OS=Mycobacterium tuberculosis GN=Rv2688c PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.318e-17
Identity = 62/172 (36.05%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   10 GSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNG--QSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDRE 516
            G YS GM+ RL  A +LI DP+L+ LDEPT+G+DP+  R + DII D K +GR I LTTH M  AD L DR+A +  GR+  + +   LK    +   V V + G   G   +    D     P   +V +    H++ +              H REA L   FVE+  R+
Sbjct:  145 GKYSKGMQMRLPFARSLINDPELLFLDEPTSGLDPVNARKIKDIIVDLKARGRTIFLTTHDMATADELCDRVAFVVDGRIVALDSPTELKIA-RSRRRVRVEYRGDGGGLETAEFGMDGLADDPAFHSVLR--NHHVETI--------------HSREASLDDVFVEVTGRQ 299          
The following BLAST results are available for this feature:
BLAST of DY257739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NODI_RHIGA2.218e-1832.28Nod factor export ATP-binding protein I OS=Rhizobi... [more]
DRRA_STRPE2.218e-1846.39Daunorubicin resistance ATP-binding protein drrA O... [more]
YFIL_BACSU2.452e-1740.57Uncharacterized ABC transporter ATP-binding protei... [more]
NODI_RHIS32.452e-1753.09Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIL34.183e-1753.09Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI2_RHIME4.183e-1753.09Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHILV5.463e-1753.09Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIEC7.135e-1751.85Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHILO9.318e-1751.85Nod factor export ATP-binding protein I OS=Rhizobi... [more]
FLQE1_MYCTU9.318e-1736.05Fluoroquinolones export ATP-binding protein Rv2688... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257739 ID=DY257739; Name=DY257739; organism=Citrus clementina; type=EST; length=1096bp
GTGAGAGCTGGGAGCTACAGTGGAGGAATGAAGCGTCGCCTTAGTGTTGC
CATAGCTCTTATTGGTGATCCAAAGTTGGTCATTCTGGATGAACCGACTA
CTGGAATGGATCCCATTACGAGGAGGCATGTTTGGGATATAATACAAGAT
GCAAAGAAAGGTCGTGCCATTATCCTGACGACACACTCAATGGAAGAAGC
TGACATTCTTAGTGACCGCATAGCTATAATGGCAAAGGGCAGACTCCGCT
GTATTGGAACCTCAATCAGATTAAAGTCAAAGTTTGGTACTGGTTTCATT
GTTACTGTTAATTTCACCGGAAGCAATAATGGACAAAGTCCTCTTAATGG
AGATCATGAAGTTGCAAGTCCTCATCATGATGCAGTGAAGCAGTTCTTTG
AAACTCATTTAGATGTGTTACCAAAAGAGGAGAATAAAGCATTCCTGACA
TATGTCATTCCCCATGATAGAGAGGCGATTTTGAAAAAATTTTTTGTGGA
GCTCCAAGATAGAGAAAAAGAATTGGGTATAGCAGATATTCAAGTAAGTC
TCACAACACTAGAAGATGTTTTCTTGAATATAGCAAAACAGGCAGAGCTA
GAAACTGCTGCTGCTGAAGGAAGGTTGGTCACTCTAAACTTGACATCCGG
GGCATCAGTTGAGATACCTCCAGGAGCAAGGTTTGTGGGGATTCCTGGAA
TGGAATCTGCAGAGAATCCTAGAGGCATTATGGTTGAAGTATACTGGGAG
CAAGATGATACTGGTGCTCTCTGCATTTCCGGCCACTCTCCTGAAAAACC
AATACCCCCTCATGTCGAACTAGATGCTTCTTCAGCTTCGACTTCCCGTG
GAAATTTGTTCGGCCAGACAGGACCAGTTCATGGAAATGTCATCGATCCC
AATCAAATTGGTGACTAACACCCTTTAATAGCTTTTCACGTATTACAATA
TTTTACTGGAATACCAAGTTGTTTTAAGGATTTTGGTAATTTAAAGGATG
TTTTTGTATATCAATGTGAAAATTTTAATTTCTTTTTTCCGTAATGCCAC
CAAAAAAAACAGGGAAAAATTCCCTTTCACATTTTTTTCTTTTAAT
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