DY257739

Overview
NameDY257739
Unique NameDY257739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257739_ssr605 microsatellite DY257739_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9913 contig Ccv1_Contig9913:4..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YADG_ECOLI (Uncharacterized ABC transporter ATP-binding protein yadG OS=Escherichia coli (strain K12) GN=yadG PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.113e-15
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            RA   SGGMKRRL +A AL+ +PKL+ILDEPT G+D   RR +W  ++D   KG  IILTTH +EEA++L   I I+  G L
Sbjct:  133 RARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGEL 214          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_BURTA (Nod factor export ATP-binding protein I OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nodI PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.113e-15
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            + G  SGGMKRRL++A AL+ +P +++LDEPTTG+DP  R  +W+ ++    +G+ I+LTTH MEEA+ L  R+ ++ +GR
Sbjct:  133 KVGELSGGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLLVRGKTILLTTHFMEEAERLCHRLCVIEEGR 213          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_BRASS (Nod factor export ATP-binding protein I OS=Bradyrhizobium sp. (strain SNU001) GN=nodI PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.722e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKG 240
            VR     GGMKRRL++A ALI DP L+++DEPTTG+DP  R  +W+ ++    +G+ I+LTTH MEEA+ L D + ++  G
Sbjct:  133 VRVSLLGGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKTILLTTHFMEEAERLCDPLCVLESG 213          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RALME (Nod factor export ATP-binding protein I OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nodI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.488e-14
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            SGGM+RRL+VA ALI DP L+I+DEPTTG+DP  R  +W+ ++     G+ I+LTTH MEEA+ L + + ++  GR
Sbjct:  137 SGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLSAGKTILLTTHFMEEAERLCNHLCVIDAGR 212          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RALSO (Nod factor export ATP-binding protein I OS=Ralstonia solanacearum GN=nodI PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.943e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            SGGM+RRL+VA +LI DP ++++DEPTTG+DP  R  +W+ ++     G+ I+LTTH MEEA+ L D + ++  GR
Sbjct:  149 SGGMRRRLTVARSLINDPDVLVMDEPTTGLDPQARHLIWERLRSLLASGKTILLTTHFMEEAERLCDELCVIDNGR 224          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NODI_RALEJ (Nod factor export ATP-binding protein I OS=Ralstonia eutropha (strain JMP134) GN=nodI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.314e-14
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGR 243
            SGGM+RRL+VA ALI DP L+I+DEPTTG+DP  R  +W+ ++     G+ I+LTTH MEEA+ L + + ++  GR
Sbjct:  159 SGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLMASGKTILLTTHFMEEAERLCNYLCVIDGGR 234          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YXLF_BACSU (Uncharacterized ABC transporter ATP-binding protein yxlF OS=Bacillus subtilis GN=yxlF PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.653e-14
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            R G YSGGMK+RL +A AL+  PK +ILDEP + +DP  R  V D++++ KK  A++ +TH + +A+ + D++ IM  G +   G    LK +
Sbjct:  124 RIGGYSGGMKQRLGLAQALLHKPKFLILDEPVSALDPTGRFEVLDMMRELKKHMAVLFSTHVLHDAEQVCDQVVIMKNGEISWKGELQELKQQ 216          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NOSF_PSEST (Copper transport ATP-binding protein nosF OS=Pseudomonas stutzeri GN=nosF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.645e-13
Identity = 62/209 (29.67%), Postives = 110/209 (52.63%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRL 627
            R  +YS GM++RL +A AL+G+P+L++LDEPT G+DPI  + ++ +I   + +G +IIL +H +   +   +R AI+AKG L+ +G+  +L+++   G  V +  +G +   S L          H A +   E+ ++V+    +K  L   +              L + E E    DI++   +LED++    ++A  +  A EGRL
Sbjct:  125 RVKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLDPIATQDLYLLIDRLRQRGTSIILCSHVLPGVEAHINRAAILAKGCLQAVGSLSQLRAE--AGLPVRIRASGISERDSWL---QRWTDAGHSA-RGLSESSIEVVAVNGHKLVLLRQL--------------LGEGEPE----DIEIHQPSLEDLYRYYMERAG-DVRAQEGRL 308          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: Y415_SYNY3 (Uncharacterized ABC transporter ATP-binding protein sll0415 OS=Synechocystis sp. (strain PCC 6803) GN=sll0415 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.392e-12
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 YSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGT 261
            YS GM +R+ +A ALI DP++V LDEP +G+DP+ R  V +II   K +G+ I   +H + + + + DRIAI+A+G L C G+
Sbjct:  186 YSKGMLQRVGMAQALINDPEVVFLDEPMSGLDPLGRYQVREIILSLKEQGKTIFFNSHILADVEQICDRIAILARGELLCSGS 268          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YHIH_ECOLI (Uncharacterized ABC transporter ATP-binding protein yhiH OS=Escherichia coli (strain K12) GN=yhiH PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.375e-12
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK---GRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            AG  SGGMK++L +  ALI DP+L+ILDEPTTG+DP++R   WD+I   ++     ++++ T  MEEA+   D +  M  G +   G++  L+ +
Sbjct:  145 AGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERF-DWLVAMNAGEVLATGSAEELRQQ 238          

HSP 2 Score: 68.1662 bits (165), Expect = 9.979e-11
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   25 GMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGR--AIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFG 288
            G+++RLS+A+A+I  P+++ILDEPT+G+DP+ R   W ++ D  +     I ++TH M EA+   DRI++M  G++   GT   L  K G
Sbjct:  411 GIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAE-RCDRISLMHAGKVLASGTPQELVEKRG 499          
The following BLAST results are available for this feature:
BLAST of DY257739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
YADG_ECOLI5.113e-1553.66Uncharacterized ABC transporter ATP-binding protei... [more]
NODI_BURTA5.113e-1546.91Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BRASS8.722e-1548.15Nod factor export ATP-binding protein I OS=Bradyrh... [more]
NODI_RALME1.488e-1451.32Nod factor export ATP-binding protein I OS=Ralston... [more]
NODI_RALSO1.943e-1448.68Nod factor export ATP-binding protein I OS=Ralston... [more]
NODI_RALEJ3.314e-1451.32Nod factor export ATP-binding protein I OS=Ralston... [more]
YXLF_BACSU5.653e-1440.86Uncharacterized ABC transporter ATP-binding protei... [more]
NOSF_PSEST1.645e-1329.67Copper transport ATP-binding protein nosF OS=Pseud... [more]
Y415_SYNY31.392e-1244.58Uncharacterized ABC transporter ATP-binding protei... [more]
YHIH_ECOLI2.375e-1240.00Uncharacterized ABC transporter ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257739 ID=DY257739; Name=DY257739; organism=Citrus clementina; type=EST; length=1096bp
GTGAGAGCTGGGAGCTACAGTGGAGGAATGAAGCGTCGCCTTAGTGTTGC
CATAGCTCTTATTGGTGATCCAAAGTTGGTCATTCTGGATGAACCGACTA
CTGGAATGGATCCCATTACGAGGAGGCATGTTTGGGATATAATACAAGAT
GCAAAGAAAGGTCGTGCCATTATCCTGACGACACACTCAATGGAAGAAGC
TGACATTCTTAGTGACCGCATAGCTATAATGGCAAAGGGCAGACTCCGCT
GTATTGGAACCTCAATCAGATTAAAGTCAAAGTTTGGTACTGGTTTCATT
GTTACTGTTAATTTCACCGGAAGCAATAATGGACAAAGTCCTCTTAATGG
AGATCATGAAGTTGCAAGTCCTCATCATGATGCAGTGAAGCAGTTCTTTG
AAACTCATTTAGATGTGTTACCAAAAGAGGAGAATAAAGCATTCCTGACA
TATGTCATTCCCCATGATAGAGAGGCGATTTTGAAAAAATTTTTTGTGGA
GCTCCAAGATAGAGAAAAAGAATTGGGTATAGCAGATATTCAAGTAAGTC
TCACAACACTAGAAGATGTTTTCTTGAATATAGCAAAACAGGCAGAGCTA
GAAACTGCTGCTGCTGAAGGAAGGTTGGTCACTCTAAACTTGACATCCGG
GGCATCAGTTGAGATACCTCCAGGAGCAAGGTTTGTGGGGATTCCTGGAA
TGGAATCTGCAGAGAATCCTAGAGGCATTATGGTTGAAGTATACTGGGAG
CAAGATGATACTGGTGCTCTCTGCATTTCCGGCCACTCTCCTGAAAAACC
AATACCCCCTCATGTCGAACTAGATGCTTCTTCAGCTTCGACTTCCCGTG
GAAATTTGTTCGGCCAGACAGGACCAGTTCATGGAAATGTCATCGATCCC
AATCAAATTGGTGACTAACACCCTTTAATAGCTTTTCACGTATTACAATA
TTTTACTGGAATACCAAGTTGTTTTAAGGATTTTGGTAATTTAAAGGATG
TTTTTGTATATCAATGTGAAAATTTTAATTTCTTTTTTCCGTAATGCCAC
CAAAAAAAACAGGGAAAAATTCCCTTTCACATTTTTTTCTTTTAAT
back to top