DY257739

Overview
NameDY257739
Unique NameDY257739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257739_ssr605 microsatellite DY257739_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9913 contig Ccv1_Contig9913:4..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YHCH_BACSU (Uncharacterized ABC transporter ATP-binding protein yhcH OS=Bacillus subtilis GN=yhcH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.375e-12
Identity = 35/80 (43.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   13 SYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQ--DAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            +YS GM++RL +A  L+ DPK++ILDEPT G+DP   R + D ++    ++G A+I+++H + E +++ DRIAI+ KG+L
Sbjct:  132 TYSLGMRQRLGLAQCLLHDPKVLILDEPTNGLDPAGIREIRDHLKKLTRERGMAVIVSSHLLSEMELMCDRIAILQKGKL 211          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YBHF_SHIFL (Uncharacterized ABC transporter ATP-binding protein ybhF OS=Shigella flexneri GN=ybhF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.102e-12
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRL-KSKFGTGFIVTVNFTGS 324
            AG  SGGMK++L +A  L+G+PK+++LDEP  G+DPI+RR +W ++ + A +G  I+ +T  ++EA+   D + +M +G L   G    L ++  G  F++T    G+
Sbjct:  136 AGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRD-VLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGN 242          

HSP 2 Score: 72.4034 bits (176), Expect = 5.291e-12
Identity = 37/87 (42.53%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   25 GMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVW-DIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            G K+RL++A +L+ +P ++ LDEPT+G+DP+TRR  W  I    +KG  +++TTH M+EA+   DRI ++ +G+L   GT   LK++
Sbjct:  464 GFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLKAQ 549          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: YBHF_ECOLI (Uncharacterized ABC transporter ATP-binding protein ybhF OS=Escherichia coli (strain K12) GN=ybhF PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.102e-12
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRL-KSKFGTGFIVTVNFTGS 324
            AG  SGGMK++L +A  L+G+PK+++LDEP  G+DPI+RR +W ++ + A +G  I+ +T  ++EA+   D + +M +G L   G    L ++  G  F++T    G+
Sbjct:  136 AGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRD-VLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGN 242          

HSP 2 Score: 72.4034 bits (176), Expect = 5.291e-12
Identity = 37/87 (42.53%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   25 GMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVW-DIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            G K+RL++A +L+ +P ++ LDEPT+G+DP+TRR  W  I    +KG  +++TTH M+EA+   DRI ++ +G+L   GT   LK++
Sbjct:  464 GFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLKAQ 549          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: Y4389_ANASP (Uncharacterized ABC transporter ATP-binding protein all4389 OS=Anabaena sp. (strain PCC 7120) GN=all4389 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.051e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   16 YSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGT 261
            YS GM +R+ +A ALI DP+L+ LDEP +G+DP+ R  + +II   K  G+ I   +H + E + + DRIAI+++G L C G+
Sbjct:  159 YSKGMLQRVGMAQALINDPELIFLDEPMSGLDPLGRYRMREIILSLKAAGKTIFFNSHILSEVEKICDRIAILSQGELVCSGS 241          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB_BDEBA (Phosphate import ATP-binding protein pstB OS=Bdellovibrio bacteriovorus GN=pstB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.051e-12
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTS 264
            A + SGG ++RL +A AL  +P++++LDEPT+ +DPI+ RH+ ++IQ+ +K   I + THS+ +A  +SD  A M  G L   G S
Sbjct:  149 ATALSGGQQQRLCIARALATEPEILLLDEPTSALDPISTRHIEELIQELRKDVTIAIVTHSLHQAARVSDFTAFMYLGDLIEFGAS 234          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: CBIO1_SYMTH (Cobalt import ATP-binding protein cbiO 1 OS=Symbiobacterium thermophilum GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.051e-12
Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGT 261
            SGG  RR+++A  L  +P+++ILDEPT G+DP  RR + D++   A+ G  ++L +HSM++    +DR+ +M +GR+  +GT
Sbjct:  145 SGGQARRVALAGVLAMEPRVLILDEPTAGLDPQGRREILDLVGGFARTGMTVVLVSHSMDDVAEYADRVLVMHRGRVHMLGT 226          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: POTA_MYCGE (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma genitalium GN=potA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.291e-12
Identity = 54/184 (29.35%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD--AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRL----KSKFGTGFIVTVN-FTGSNNG------------QSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTY-VIPHDREAILKKFFVELQD 510
            SGGMK+R+++A +L+ +P++++LDEP + +D   R+++   +Q    K G   IL TH  EEA +LSDRI +M +G +  +G  + +    K+++   FI   N F G+  G            Q+ ++ ++ V   +   ++       D++P  ENK F    VI  + + +L K   +L+D
Sbjct:  349 SGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIANFIGQANIFKGTYLGEKKIQLQSGEIIQTDVDNNYVVGKQYKILIR---PEDFDLVP--ENKGFFNVRVIDKNYKGLLWKITTQLKD 527          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB3_STRR6 (Phosphate import ATP-binding protein pstB 3 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pstB3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.911e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSI 267
            A S SGG ++RL +A AL  +P ++++DEPT+ +DPI+   + D+IQ  KK   II+ TH+M++A  +SD+ A    G +   G ++
Sbjct:  144 AMSLSGGQQQRLCIARALAVEPDILLMDEPTSALDPISTLKIEDLIQQLKKDYTIIIVTHNMQQASRISDKTAFFLTGEICEFGDTV 230          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB3_STRPN (Phosphate import ATP-binding protein pstB 3 OS=Streptococcus pneumoniae GN=pstB3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.911e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSI 267
            A S SGG ++RL +A AL  +P ++++DEPT+ +DPI+   + D+IQ  KK   II+ TH+M++A  +SD+ A    G +   G ++
Sbjct:  144 AMSLSGGQQQRLCIARALAVEPDILLMDEPTSALDPISTLKIEDLIQQLKKDYTIIIVTHNMQQASRISDKTAFFLTGEICEFGDTV 230          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB_CARHZ (Phosphate import ATP-binding protein pstB OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pstB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.540e-11
Identity = 32/80 (40.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            A   SGG ++RL +A AL  +P+++++DEPT+ +DPI+   + ++IQ+ KK   I++ TH+M++A  +SDR A    G L
Sbjct:  147 ATGLSGGQQQRLCIARALAIEPEVLLMDEPTSALDPISTMRIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFLNGEL 226          
The following BLAST results are available for this feature:
BLAST of DY257739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
YHCH_BACSU2.375e-1243.75Uncharacterized ABC transporter ATP-binding protei... [more]
YBHF_SHIFL3.102e-1237.04Uncharacterized ABC transporter ATP-binding protei... [more]
YBHF_ECOLI3.102e-1237.04Uncharacterized ABC transporter ATP-binding protei... [more]
Y4389_ANASP4.051e-1243.37Uncharacterized ABC transporter ATP-binding protei... [more]
PSTB_BDEBA4.051e-1241.86Phosphate import ATP-binding protein pstB OS=Bdell... [more]
CBIO1_SYMTH4.051e-1240.24Cobalt import ATP-binding protein cbiO 1 OS=Symbio... [more]
POTA_MYCGE5.291e-1229.35Spermidine/putrescine import ATP-binding protein p... [more]
PSTB3_STRR66.911e-1239.08Phosphate import ATP-binding protein pstB 3 OS=Str... [more]
PSTB3_STRPN6.911e-1239.08Phosphate import ATP-binding protein pstB 3 OS=Str... [more]
PSTB_CARHZ1.540e-1140.00Phosphate import ATP-binding protein pstB OS=Carbo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257739 ID=DY257739; Name=DY257739; organism=Citrus clementina; type=EST; length=1096bp
GTGAGAGCTGGGAGCTACAGTGGAGGAATGAAGCGTCGCCTTAGTGTTGC
CATAGCTCTTATTGGTGATCCAAAGTTGGTCATTCTGGATGAACCGACTA
CTGGAATGGATCCCATTACGAGGAGGCATGTTTGGGATATAATACAAGAT
GCAAAGAAAGGTCGTGCCATTATCCTGACGACACACTCAATGGAAGAAGC
TGACATTCTTAGTGACCGCATAGCTATAATGGCAAAGGGCAGACTCCGCT
GTATTGGAACCTCAATCAGATTAAAGTCAAAGTTTGGTACTGGTTTCATT
GTTACTGTTAATTTCACCGGAAGCAATAATGGACAAAGTCCTCTTAATGG
AGATCATGAAGTTGCAAGTCCTCATCATGATGCAGTGAAGCAGTTCTTTG
AAACTCATTTAGATGTGTTACCAAAAGAGGAGAATAAAGCATTCCTGACA
TATGTCATTCCCCATGATAGAGAGGCGATTTTGAAAAAATTTTTTGTGGA
GCTCCAAGATAGAGAAAAAGAATTGGGTATAGCAGATATTCAAGTAAGTC
TCACAACACTAGAAGATGTTTTCTTGAATATAGCAAAACAGGCAGAGCTA
GAAACTGCTGCTGCTGAAGGAAGGTTGGTCACTCTAAACTTGACATCCGG
GGCATCAGTTGAGATACCTCCAGGAGCAAGGTTTGTGGGGATTCCTGGAA
TGGAATCTGCAGAGAATCCTAGAGGCATTATGGTTGAAGTATACTGGGAG
CAAGATGATACTGGTGCTCTCTGCATTTCCGGCCACTCTCCTGAAAAACC
AATACCCCCTCATGTCGAACTAGATGCTTCTTCAGCTTCGACTTCCCGTG
GAAATTTGTTCGGCCAGACAGGACCAGTTCATGGAAATGTCATCGATCCC
AATCAAATTGGTGACTAACACCCTTTAATAGCTTTTCACGTATTACAATA
TTTTACTGGAATACCAAGTTGTTTTAAGGATTTTGGTAATTTAAAGGATG
TTTTTGTATATCAATGTGAAAATTTTAATTTCTTTTTTCCGTAATGCCAC
CAAAAAAAACAGGGAAAAATTCCCTTTCACATTTTTTTCTTTTAAT
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