DY257739

Overview
NameDY257739
Unique NameDY257739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257739_ssr605 microsatellite DY257739_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9913 contig Ccv1_Contig9913:4..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: NASD_KLEOX (Nitrate transport protein nasD OS=Klebsiella oxytoca GN=nasD PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.540e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK--GRAIILTTHSMEEADILSDRIAIMAKGRLRCIG 258
            R G  SGGMK+R+ +A AL   PK+++LDEP   +D +TR H+ D +   ++     I++ TH ++EA +LSDR+ +M  G    +G
Sbjct:  135 RPGEISGGMKQRVGIARALAMKPKVLLLDEPFGALDALTRAHLQDAVMQIQQSLNTTIVMITHDVDEAVLLSDRVLMMTNGPAATVG 221          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB2_PHOPR (Phosphate import ATP-binding protein pstB 2 OS=Photobacterium profundum GN=pstB2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.011e-11
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            A S SGG ++RL +A  +  +P+++++DEPT+ +DPI  + + D+++  KK   I++ THSM++A  +SDR A    G L
Sbjct:  148 AFSLSGGQQQRLCIARTIAMEPEVILMDEPTSALDPIATKKIEDLMESLKKDFTIVIVTHSMQQARRISDRTAFFLMGEL 227          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: CBIO2_BACLD (Cobalt import ATP-binding protein cbiO 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.011e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAI--ILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            SGG  RR+++A  L  +P++++LDEPT G+DP  R+ + D+     K R +  IL THSME+A   +D + +M KG ++  GT   L S+
Sbjct:  147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPRGRKEIMDMFYSLHKQRNLTTILVTHSMEDAAAYADELIVMHKGTVKAKGTPRELFSR 236          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: SRTF_STRPY (Lantibiotic transport ATP-binding protein srtF OS=Streptococcus pyogenes GN=srtF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.479e-11
Identity = 34/78 (43.59%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   16 YSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            +S GMK+RL +AI+LI  PKL+ILDEPT G+DPI  + + +II+  K +G  I++++H + E + L+D I  + +G++
Sbjct:  126 FSLGMKQRLGIAISLINSPKLLILDEPTNGLDPIGIQELREIIESFKSEGMTIMISSHILSEVEHLADFIGFIYEGKI 203          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: SRTF_STRP1 (Lantibiotic transport ATP-binding protein srtF OS=Streptococcus pyogenes serotype M1 GN=srtF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.479e-11
Identity = 34/78 (43.59%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   16 YSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAK-KGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            +S GMK+RL +AI+LI  PKL+ILDEPT G+DPI  + + +II+  K +G  I++++H + E + L+D I  + +G++
Sbjct:  126 FSLGMKQRLGIAISLINSPKLLILDEPTNGLDPIGIQELREIIESFKSEGMTIMISSHILSEVEHLADFIGFIYEGKI 203          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB_AQUAE (Phosphate import ATP-binding protein pstB OS=Aquifex aeolicus GN=pstB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.850e-11
Identity = 35/92 (38.04%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSK 282
            A S SGG ++RL +A A+  +P+++++DEPT+ +DPI+   + D+I + KK   II+ TH+M++A  +SD  A M  G L   G + ++ +K
Sbjct:  151 AYSLSGGQQQRLCIARAIAVEPEVLLMDEPTSALDPISTAKIEDLIVELKKKVTIIIVTHNMQQAARVSDFTAFMYMGELIEFGPTEKIFTK 242          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB2_VIBCH (Phosphate import ATP-binding protein pstB 2 OS=Vibrio cholerae GN=pstB2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.850e-11
Identity = 29/76 (38.16%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            SGG ++RL +A  +  +P ++++DEPT+ +DPI    + ++++D KK   I++ THSM++A  +SDR A    G L
Sbjct:  149 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEDLKKNYTIVIVTHSMQQARRISDRTAFFLMGEL 224          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB_SPIKU (Phosphate import ATP-binding protein pstB OS=Spiroplasma kunkelii GN=pstB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.979e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            A + SGG ++RL +A A+   PK++++DEPT+ +DPI+   + ++I   KK   I+L TH M++A  ++D  A  AKG+L
Sbjct:  163 AFALSGGQQQRLCIARAIAMKPKILLMDEPTSALDPISTSKIEELITQLKKDFTIVLVTHHMQQAARVADYTAFFAKGKL 242          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: PSTB_MYCCT (Phosphate import ATP-binding protein pstB OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=pstB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.979e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRL 246
            SGG ++RL +A A+   PK++++DEPT+ +DPI    V +++ D KK   I++ THS+++A  +SD  A   KG L
Sbjct:  167 SGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYTIVMVTHSLQQATRISDYTAYFLKGEL 242          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: POTA_BACHK (Spermidine/putrescine import ATP-binding protein potA OS=Bacillus thuringiensis subsp. konkukian GN=potA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.979e-11
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK--GRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNN 330
            SGG ++R+++A A++ +P++++LDEP   +D   R+ +   +++ ++  G   I  TH  EEA  +SDRI +M KG +  IGT   + +K  T F+ T  F G NN
Sbjct:  136 SGGQQQRVAIARAIVNNPRVLLLDEPLGALDFKLRKDLQRELKNLQRNLGITFIYVTHDQEEAMSMSDRIVVMNKGHIEQIGTPKEIYNKPKTLFVAT--FIGENN 239          
The following BLAST results are available for this feature:
BLAST of DY257739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NASD_KLEOX1.540e-1139.08Nitrate transport protein nasD OS=Klebsiella oxyto... [more]
PSTB2_PHOPR2.011e-1138.75Phosphate import ATP-binding protein pstB 2 OS=Pho... [more]
CBIO2_BACLD2.011e-1140.00Cobalt import ATP-binding protein cbiO 2 OS=Bacill... [more]
SRTF_STRPY4.479e-1143.59Lantibiotic transport ATP-binding protein srtF OS=... [more]
SRTF_STRP14.479e-1143.59Lantibiotic transport ATP-binding protein srtF OS=... [more]
PSTB_AQUAE5.850e-1138.04Phosphate import ATP-binding protein pstB OS=Aquif... [more]
PSTB2_VIBCH5.850e-1138.16Phosphate import ATP-binding protein pstB 2 OS=Vib... [more]
PSTB_SPIKU9.979e-1140.00Phosphate import ATP-binding protein pstB OS=Spiro... [more]
PSTB_MYCCT9.979e-1140.79Phosphate import ATP-binding protein pstB OS=Mycop... [more]
POTA_BACHK9.979e-1135.85Spermidine/putrescine import ATP-binding protein p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257739 ID=DY257739; Name=DY257739; organism=Citrus clementina; type=EST; length=1096bp
GTGAGAGCTGGGAGCTACAGTGGAGGAATGAAGCGTCGCCTTAGTGTTGC
CATAGCTCTTATTGGTGATCCAAAGTTGGTCATTCTGGATGAACCGACTA
CTGGAATGGATCCCATTACGAGGAGGCATGTTTGGGATATAATACAAGAT
GCAAAGAAAGGTCGTGCCATTATCCTGACGACACACTCAATGGAAGAAGC
TGACATTCTTAGTGACCGCATAGCTATAATGGCAAAGGGCAGACTCCGCT
GTATTGGAACCTCAATCAGATTAAAGTCAAAGTTTGGTACTGGTTTCATT
GTTACTGTTAATTTCACCGGAAGCAATAATGGACAAAGTCCTCTTAATGG
AGATCATGAAGTTGCAAGTCCTCATCATGATGCAGTGAAGCAGTTCTTTG
AAACTCATTTAGATGTGTTACCAAAAGAGGAGAATAAAGCATTCCTGACA
TATGTCATTCCCCATGATAGAGAGGCGATTTTGAAAAAATTTTTTGTGGA
GCTCCAAGATAGAGAAAAAGAATTGGGTATAGCAGATATTCAAGTAAGTC
TCACAACACTAGAAGATGTTTTCTTGAATATAGCAAAACAGGCAGAGCTA
GAAACTGCTGCTGCTGAAGGAAGGTTGGTCACTCTAAACTTGACATCCGG
GGCATCAGTTGAGATACCTCCAGGAGCAAGGTTTGTGGGGATTCCTGGAA
TGGAATCTGCAGAGAATCCTAGAGGCATTATGGTTGAAGTATACTGGGAG
CAAGATGATACTGGTGCTCTCTGCATTTCCGGCCACTCTCCTGAAAAACC
AATACCCCCTCATGTCGAACTAGATGCTTCTTCAGCTTCGACTTCCCGTG
GAAATTTGTTCGGCCAGACAGGACCAGTTCATGGAAATGTCATCGATCCC
AATCAAATTGGTGACTAACACCCTTTAATAGCTTTTCACGTATTACAATA
TTTTACTGGAATACCAAGTTGTTTTAAGGATTTTGGTAATTTAAAGGATG
TTTTTGTATATCAATGTGAAAATTTTAATTTCTTTTTTCCGTAATGCCAC
CAAAAAAAACAGGGAAAAATTCCCTTTCACATTTTTTTCTTTTAAT
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