DY257746

Overview
NameDY257746
Unique NameDY257746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11452 contig Ccv1_Contig11452:407..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 9.945e-49
Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N++ +L+LQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:   60 NTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.893e-48
Identity = 91/172 (52.91%), Postives = 128/172 (74.42%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N++ +L+LQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:   60 NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.779e-48
Identity = 89/172 (51.74%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N++ +L+LQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:   60 NTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.099e-47
Identity = 89/172 (51.74%), Postives = 129/172 (75.00%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N++ +L+LQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:   60 NTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 81/158 (51.27%), Postives = 103/158 (65.19%), Query Frame = 1
Query:   16 LILQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLEK 471
            L+LQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV  E+LKE+      G      +PWF+L+ ++F+FKWW   DH  K
Sbjct:   66 LLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 80/173 (46.24%), Postives = 108/173 (62.43%), Query Frame = 1
Query:   16 LILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 519
            L+LQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +E    +PWF+L+  +FLF WWD L     EKG     +D K++  L+
Sbjct:   81 LLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.119e-37
Identity = 81/176 (46.02%), Postives = 124/176 (70.45%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVID-MKTIHK 513
            N + +L+LQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++E+L +L +  D G+  +K++PWFRL+  N L  WW++L    L  +++   TIH+
Sbjct:   67 NGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL--NNLKPLVEPTNTIHR 238          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 74/172 (43.02%), Postives = 116/172 (67.44%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N+K  +++QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW R + + FL++WW HL+  T    +++  IH++
Sbjct:   60 NTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 227          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.650e-33
Identity = 75/182 (41.21%), Postives = 113/182 (62.09%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 516
            N + EL+LQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       +   K +PWF+++ +N+LF WW+ L+   L+EV + + IH++
Sbjct:  113 NEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD--DLSEVENDRQIHRM 287          
BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.500e-12
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 NSKYELILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 426
            NS+ +L+LQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+G+ CA        TP+  + Y+   D    EHEL ++ F V D     NPDEV+ Y+Y + +++ + +          + + WF+L
Sbjct:   40 NSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEYQSIDEITQRMMMTPE-----QFTAWFQL 161          
The following BLAST results are available for this feature:
BLAST of DY257746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
IDI1_PONAB9.945e-4952.91Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_BOVIN2.893e-4852.91Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MOUSE3.779e-4851.74Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT1.099e-4751.74Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_SCHPO2.078e-3851.27Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_PHARH2.078e-3846.24Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI_DICDI5.119e-3746.02Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI2_HUMAN8.732e-3743.02Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_YEAST7.650e-3341.21Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_ERWCT1.500e-1232.87Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AH10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257746 ID=DY257746; Name=DY257746; organism=Citrus clementina; type=EST; length=808bp
AACTCAAAATATGAGCTAATCCTTCAGCAACGCTCTGGAACCAAAGTTAC
CTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTG
AATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAA
AGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGA
TGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCA
AGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGAGATGTT
AGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGTCAACCG
GGAACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAGAAGGTT
TGAAGCTGTCTCCTTGGTTCAGACTGGTTGTGGACAATTTCTTGTTCAAG
TGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGACATGAA
GACCATTCACAAGTTGACTTAATAAAGCCGCAGGCCCTTGAAACACAGTA
TTTGTGTGCCGGAACCTGTATTCCAATAAGTTTGGGCATTTGAGAGTTCT
TCAAGACATTAAGGGTACACAGTATCTTCTCACCGGTTTCTTTATTCCAA
TAAATTTGGATATGCGAGAGTTCTACACAGATTAGCATTTTGTTGTTGAC
GTTACCTTATCTTTTCGTATGTGCTGCTTTTATGGAATTTTATTGTTAAG
TTTGTAATTTTGACATTACATATGGTTTAGTAAAAAAATAAAAATCTGCT
TCTTCTAT
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