DY257746

Overview
NameDY257746
Unique NameDY257746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY257746 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:   16 LILQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 435
            ++LQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A        T +G   Y+A +D   G  EHE D++L    D + +P+P EVA  ++V   ++     +A    E    +PW   V++
Sbjct:   43 VLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEV-----RAKLAAEPAAYTPWLAEVLE 163
The following BLAST results are available for this feature:
BLAST of DY257746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
IDI_NOCFA5.700e-1233.80Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AH10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257746 ID=DY257746; Name=DY257746; organism=Citrus clementina; type=EST; length=808bp
AACTCAAAATATGAGCTAATCCTTCAGCAACGCTCTGGAACCAAAGTTAC
CTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTG
AATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAA
AGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGA
TGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCA
AGTGGGGGGAGCATGAACTTGACTACTTACTTTTCATTGTCCGAGATGTT
AGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGTCAACCG
GGAACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAGAAGGTT
TGAAGCTGTCTCCTTGGTTCAGACTGGTTGTGGACAATTTCTTGTTCAAG
TGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGACATGAA
GACCATTCACAAGTTGACTTAATAAAGCCGCAGGCCCTTGAAACACAGTA
TTTGTGTGCCGGAACCTGTATTCCAATAAGTTTGGGCATTTGAGAGTTCT
TCAAGACATTAAGGGTACACAGTATCTTCTCACCGGTTTCTTTATTCCAA
TAAATTTGGATATGCGAGAGTTCTACACAGATTAGCATTTTGTTGTTGAC
GTTACCTTATCTTTTCGTATGTGCTGCTTTTATGGAATTTTATTGTTAAG
TTTGTAATTTTGACATTACATATGGTTTAGTAAAAAAATAAAAATCTGCT
TCTTCTAT
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