DY257753

Overview
NameDY257753
Unique NameDY257753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY257753 vs. ExPASy Swiss-Prot
Match: MIAA_BACHD (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Bacillus halodurans GN=miaA PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.815e-11
Identity = 36/109 (33.03%), Postives = 49/109 (44.95%), Query Frame = 3 
Query:    3 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDE----SCFGSLSGDEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTG 317
            D A PLI+EI  R  +PF+VGGT  Y+ A++  F L D   D D       F +  G + +                      P AA  IHPNNYR++ + L +   TG
Sbjct:   79 DLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQAL--------------HDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTG 173

HSP 2 Score: 36.1946 bits (82), Expect = 2.815e-11
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 2 
Query:  389 FNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLR-----QAIGVREFEDFL 574
            +N   I +     VL   + +RVD M++ GL+DE   +Y+      RG+R     QAIG +E  D+L
Sbjct:  190 YNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYD------RGIRDCQSVQAIGYKEMYDYL 250
The following BLAST results are available for this feature:
BLAST of DY257753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MIAA_BACHD2.815e-1133.03tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BB02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257753 ID=DY257753; Name=DY257753; organism=Citrus clementina; type=EST; length=1259bp
GAGATTCTGCTGTTCCTCTTATCAGTGAGATATTATCACGTGATCACATA
CCATTCATTGTTGGGGGTACAAACTACTATATTCAGGCTCTTGTGAGTCC
ATTTCTTCTAAATGATTCAGCAGAAGATATGGATGAAAGCTGCTTTGGCA
GCCTTTCTGGGGATGAGCCGGTTGGTCCTGACTCTGACTTAGCAAGAGAC
AGTTCTAGCTATAGTTATGACCTCCTCAAAGACCTTGACCCAGTTGCAGC
AAACAGAATTCATCCAAATAACTATAGAAAAATCAACCAATACCTTAGCT
TGTATGCACGCACTGGAGTTCTCCCTAGCAAACTTTATCAAGGAAAAGCC
GCTGAGGGCAGAACTGGGGCCGAGTAGACAATTTTAGATTCAATTGCTGC
TTTATATGTGTTGACGCCGCAAATCCTGTGCTGGACCGATATGTGGAACA
AAGAGTTGACTGCATGATAGATGCTGGATTGCTTGATGAGGTGTATGACA
TTTACAATGCGAATGCTGATTATACCAGAGGTCTGCGGCAGGCCATAGGT
GTTCGGGAGTTTGAGGATTTTCTGAGCGTTTACCATTCTGTGGACAGAGA
TAACAAGACAAGTGGACCTACTAATGCAACTCTGAATTCTAGAAACAAGG
ATGACAAGACATTGAAAGACTGTATGAGAGCAATACTTAAGTCATCCGCT
GATGATCAACTAAAAGTACTTTTAGAAGAGGCCATTGATCGAGTAAAATT
AAACACCAGAAGACTTGTTCGATGTCAAAAGAGGAGGCTCAATCAACTTC
AAACTTTGTTTGGATGGGACATTCATTATGTTGATTCAACAGAATCCATT
TCATGCAAATCAGATGAAGTGTGGACTGCACAAGTGGTTGGACCTGCTGT
GAAATTATTAGAGCTTTCCTTAGTGAAGAATGAAAATTGATGCCTAATTT
GGCGGGTATGATTGGCACATCGGTGAAATCAATTGAAAAAAACTTGGGGG
ACTCCATATGTAAGCAAGGGCTGGGGGAAAACAAGGTTTCTTAAAGGGTG
CAAACAAATGGGGAACCACCCCAAAAAAGGGGTCCCCCGGGGCTTCGAAA
GGCAAATTTTTTAAATTCTTTGAGAAGTTTCTAAAAAAATTCTCGCTTCC
GCGGGGGGGCACCCCGCCCTCCAACCACGAAAAAAAATATTTTTTGGGTT
AACCCAACAAAAAAGCAAAAATCTTTTTAAAAAGTGGGCGGGGGCGCCCG
GGGGGGTTT
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