DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  108 GPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDS 365
            GP  TPYEGGV+++   +P++YP + P + F+ KIFHPN+   +G +CLD++   W+  + L ++  + +  L+A+P P  PLN D+
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 126          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 38/120 (31.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   21 EVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDSGNLL 377
            +V +   +D ++ LV D  N+ ++     GPS+TPY GG++++   +P +YP + P + F+ +IFHPN+   +G +CLD++   WSP + + ++    +  L+ +P    PLN ++  LL
Sbjct:   11 DVMKLLMSDYEVTLVND--NMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALL 128          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMAR 416
            L  EYK++    + +P   +V    ++ N F+W ALI GP  T +E GVF    + P  YPL PP++RF  ++FHPN+ +  G +C+ IL                WSP  +++ +  ++++++A P  +S  N D+  + R  D   F  +A+
Sbjct:    9 LMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRD-DREQFYKIAK 156          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMAR 416
            L  EYK++    + +P   +V    ++ N F+W ALI GP  T +E GVF    + P  YPL PP++RF  ++FHPN+ +  G +C+ IL                WSP  +++ +  ++++++A P  +S  N D+  + R  D   F  +A+
Sbjct:    9 LMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRD-DREQFYKIAK 156          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMAR 416
            L  EYK++    + +P   +V    ++ N F+W ALI GP  T +E GVF    + P  YPL PP++RF  ++FHPN+ +  G +C+ IL                WSP  +++ +  ++++++A P  +S  N D+  + R  D   F  +A+
Sbjct:    9 LMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRD-DREQFYKIAK 156          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMAR 416
            L  EYK++    + +P   +V    ++ N F+W ALI GP  T +E GVF    + P  YPL PP++RF  ++FHPN+ +  G +C+ IL                WSP  +++ +  ++++++A P  +S  N D+  + R  D   F  +A+
Sbjct:    9 LMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRD-DREQFYKVAK 156          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   39 SADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 356
            S D  I    +  N+FKW   I G   T YE   ++L+   P  YP   P V+F+T  FHPNV    G ICLDILK+ WS  + ++++  ++ +L+  P  +SPLN
Sbjct:   45 SGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVD-SHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLN 149          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 3
Query:   72 DSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            ++NIF W  LI+GP  TPY  GVF      P+ YPL PP++ F   I HPN+ +  GE+C+ IL             +  WSP  +++ +  +++++++ P  +S  N D+  L R
Sbjct:   31 ENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI-YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWR 145          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  108 GPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 446
            GP  + Y+GGV+++   + E YP + P + F  KI+HPNV   +G +CLD++   WSP + L ++    +  L+ +P P  PLN ++ +L+   D   +++  + Y    A P+
Sbjct:   38 GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMR-DKNAYENKVKEYCERYAKPE 150          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.400e-14
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   99 LIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD 389
            +I  P +  Y  G         E YP++PP+V  L KIFHPN+  K G +CL+IL+  WSPA  LQS+   ++ L   P P+ PLN D+  LL  G+
Sbjct:   66 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGE 161          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBE2H_BOVIN5.685e-1639.08Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC8_SCHPO5.685e-1631.67Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UB2G2_PONAB5.685e-1630.52Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.685e-1630.52Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.685e-1630.52Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.685e-1630.52Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2C_XENLA1.654e-1538.68Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC7_YEAST2.821e-1533.62Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC4_WHEAT1.072e-1431.58Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_YEAST1.400e-1441.24NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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