DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:9..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.700e-25
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    9 KEYKEVQR-EKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 437
            +E+KEV + E+++   I++   D N  +    I GP  TPYEGG +QL   +PE YP  PP+VRF+TKI+HPN+   TG ICLDILK+ W+ A TL++V  ++ AL+A  EPD P +    N  +      F+  AR++  + A
Sbjct:   11 REFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP-EMFKQTARLWAHVYA 153          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.700e-25
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   18 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 437
            KE QR  S   P I     + N+  +  +I GP+++PYEGGVF+L   +PE+YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL+ +     +S +     + A+ +TRL A
Sbjct:   12 KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDT-AKEWTRLYA 150          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++QR+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +  +  ++ D   +  +AR +T+  AM
Sbjct:    8 KELTDLQRDPPAQCSAGPVGDD--LFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKA-DREKYNRLAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 51/126 (40.48%), Postives = 84/126 (66.67%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q++  +      + D  N+ KW A+I GPS TP+E G F+L  +  EQYP +PPQV+F++++FHPNV + +GE+CLDIL+N WSP + + S+  ++ +L+  P   SP N ++ NL +
Sbjct:    9 LMRDFKRMQQDPPSGVSASPLPD--NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNV-YASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.949e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE +++ R+  A      V DD  +F W A I GP  +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +TR  AM
Sbjct:    8 KELQDLGRDPPAQCSAGPVGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNELAREWTRKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 3
Query:    3 LFKEYKEV---QREKSADP--------DIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLT----------------------------------KIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMY 422
            L +EY+ +   QR+K +          D++ V +D N +KWTA +KGP+ T Y+   ++L   +P  YP QPP+  F+                                   ++ HPN+ F TGEICLDIL+  W+PAWTL S   AI+ L+  PEP SPL+ D  NL++  D++ + S+   Y
Sbjct:    7 LLQEYRSILKEQRQKGSASTLSSNGILDLKPVSED-NFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYY 190          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.325e-24
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PPQV+F++++FHPNV + TGE+CLDIL+N WSP + + +V  +I +L+  P   SP N ++ NL +
Sbjct:    9 LMRDFKRMQTDPPAGVSASPVPD--NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNV-YATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.325e-24
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE +++ R+  A      V DD  +F W A I GP ++PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    8 KELQDLGRDPPAQCSAGPVGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRERYNQLAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLV----------CDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFL-TKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMY 422
            + KEYK + +  ++D  I              D++++ KW A+I GPS TPYE   F++   VP  YP+ PP++ F+   I H NV   TGEICL+ILK   W+P W L     A+  L+  P  DSPL+ D GN++R GD+  +Q + + +
Sbjct:   22 IVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 173          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   18 KEVQR-EKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE QR  +   P I  + D++N   +  ++ GP+ +P+EGGVF+L   +PE YP+  P+VRF+TKI+HPN+  + G ICLD+LK+ WSPA  ++++  +I AL++ P PD PL  D   L +  +    ++ AR +T+  A+
Sbjct:   10 KETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRN-AREWTQKYAV 149          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBE2K_BOVIN6.700e-2541.67Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC35_ARATH6.700e-2543.97Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UB2D4_HUMAN1.143e-2441.67Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_CANAL1.493e-2440.48Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBCD1_DROME1.949e-2440.97Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBCX_PICPA2.546e-2433.51Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBC2_NECHA3.325e-2442.06Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_CAEEL3.325e-2440.28Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBCX_YEAST4.343e-2437.50Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBE2N_DROME5.672e-2439.44Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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