DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:9..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNRIAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNRIAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNRIAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNRIAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  +AR +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNRIAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 52/126 (41.27%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PP V+F++++FHPNV + TGE+CLDIL+N WSP + + ++  +I +L+  P   SP N ++ NL R
Sbjct:    9 LMRDFKRMQTDPPAGVSASPVAD--NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNV-YGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYR 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++QR+  A      V DD  +F W A I GP  + Y+GGVF L    P  YP +PP++ F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  D   + +S D   +   AR +T+  AM
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKS-DKEKYNRHAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++QR+  A      V DD  +F W A I GP  + Y+GGVF L    P  YP +PP++ F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  D   + +S D   +   AR +T+  AM
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKS-DKEKYNRHAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++QR+  A      V DD  +F W A I GP  + Y+GGVF L    P  YP +PP++ F TKI+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  D   + +S D   +   AR +T+  AM
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKS-DKEKYNRHAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE +++QR+           DD  +F+W A I GP+ +P+ GGVF +    P  YP +PP+V F TK++HPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++  ++ ++S A+ +T+  AM
Sbjct:    8 KELRDLQRDPPVSCSAGPTGDD--MFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNIN-SNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVK-YESTAQSWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UB2D2_XENLA5.672e-2439.73Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT5.672e-2439.73Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE5.672e-2439.73Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN5.672e-2439.73Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN5.672e-2439.73Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC2_EMENI7.408e-2441.27Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UB2D1_MOUSE7.408e-2441.67Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN7.408e-2441.67Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN7.408e-2441.67Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC30_ARATH9.675e-2438.19Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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