DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 60/146 (41.10%), Postives = 89/146 (60.96%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD-SGNLLRSGDIRGFQSMARMYTRLAA 437
            + KE + V+ + +A   ++ V  +S+I        GP  TPYEGG F +   VP +YP +PP+++F TK++HPN+   TG ICLDILKNAWSP  TL+S   ++ AL+  PEP+ P + + + + LR  D   F   A ++TRL A
Sbjct:    7 IMKEIQAVKDDPAAHITLEFV-SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLR--DRESFNKTAALWTRLYA 149          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 3
Query:   69 DDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYT 425
            + +NI++WTA+I+GP  TPYEGG+F L+   P  YP +PP+  F T I+HPN++   G IC++ILK+ W+PA  ++ V  +I+ L+  P PD PL  + G L ++   + F   AR +T
Sbjct:   32 NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNIN-DEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQ-FDQRAREFT 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +  A      + D  N+  W A+I GP+ TP+E G F+L     EQYP +PPQV+F++++FHPNV +  GE+CLDIL+N WSP + + +V  +I +L+  P   SP N ++ NL +
Sbjct:    9 LMRDFKRMQTDPPAGVSASPIPD--NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNV-YANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PP V+F++++FHPNV + TGE+CLDIL+N WSP + + ++  +I +L+  P   SP N ++ NL +
Sbjct:    9 LMRDFKRMQTDPPAGVSASPVAD--NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNV-YGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  +      V +D  +F W A I GPS +PY GGVF LA   P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +++  P PD PL  +  ++ ++   + ++S AR +TR  A+
Sbjct:    8 KELTDLGRDPPSSCSAGPVGED--LFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQ-YESTAREWTRKYAI 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q     DP + +     ++NI +W A+I GP  TP+E G F+L     E+YP +PP VRFL+K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC1_YEAST9.675e-2441.10Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC31_ARATH1.264e-2342.02Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_TRIHA1.650e-2340.48Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASPFU1.650e-2340.48Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC1_MAGGR1.650e-2339.58Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBE2B_RAT2.155e-2342.06Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.155e-2342.06Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.155e-2342.06Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.155e-2342.06Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.155e-2342.06Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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