DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:9..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQL--VCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L  ++K +Q+    DP + +     D+NI  W ALI GP  TP++GG F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + +V  +I +L+  P PDSP N ++  L
Sbjct:    9 LMWDFKRLQK----DPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    6 IHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 3
Query:    9 KEYKEVQREKS---ADPDIQLVCDDSNIFKWTAL---IKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 350
            +E+KEV R +        I+LV D      WT L   I GP  TPYEGG F L   VPE YP  PP+VRF+T+I+HPN+   TG ICLDILK+ W+ A TL++V  ++ AL+A  EPD P
Sbjct:   11 REFKEVMRSEEIVQCSIKIELVNDS-----WTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDP 125          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  ++ W A I GPS +PY GGVF L+   P  YP +PP+V F TKI+HPN++  +G ICLDILK+ WSPA TL  V  +I +L+    PD PL  +   + ++ D   +++ A+ +T+  A+
Sbjct:    9 KELSDLGRDPPASCSAGPVGDD--LYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNIN-SSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKT-DKAKYEATAKEWTKKYAV 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q++  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC3_ARATH2.155e-2342.06Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UB2D2_PIG2.155e-2339.04Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBCD4_DROME2.815e-2349.17Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2D3_RAT2.815e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.815e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.815e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.815e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.815e-2339.58Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UBC5_YEAST3.676e-2340.28Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_ARATH3.676e-2339.52Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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