DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.190e-23
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   18 KEVQR-EKSADPDIQLVCDDS-NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 350
            KE+Q  E++ D     VC  S N+ + T  I GP  TPYEGG FQ+   +P+ YP +PP+++F TK++HPN+  ++G ICLDILK+ WSPA TL++   +I AL++ PEP  P
Sbjct:    9 KELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDP 121          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +      +     D+NI  W A+I GP  TP+E G F+L     E+YP +PP VRF++K+FHPNV +  G ICLDIL+N WSP + + ++  +I +L++ P P+SP N  +  L +
Sbjct:    9 LMRDFKRLQEDPPTG--VSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNV-YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  +++R+         V DD  ++ W A I GP+ +PY GGVF L+   P  YP +PP++ F TKI+HPN++   G ICLDILK+ WSPA TL  V  +I +L+    PD PL  +  ++ ++ D   +++ AR +T+  A+
Sbjct:    9 KELSDLERDPPTSCSAGPVGDD--LYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNIN-ANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKT-DRPKYEATAREWTKKYAV 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q++  A   I     D+NI  W A+I GP  TP++GG F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQQDPPAG--ISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            +E +++QR   A+     V ++ +IF W A I GP  +PY GGVF ++      YP +PP+V F TK++HPN+  K G ICLDILK  WSPA T   V  +I +L+  P P+ PL  +  +L +  D   ++S A+ +T+  AM
Sbjct:    8 RELRDMQRHPPANCSAGPVAEE-DIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSK-GSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKV-DKSKYESTAQKWTQKYAM 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 3
Query:   78 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            ++F W A I GP+ +PY GGVF L+   P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++  AR +TR  A+
Sbjct:   29 DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKT-DRSRYELSAREWTRKYAI 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   66 CDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            C D N+  W A+I GP+ TP+E G F+L     E YP +PP V+FL+K+FHPNV +  GE+CLDIL+N WSP + + ++  +I +L+  P P+SP N ++ +L R
Sbjct:   29 CAD-NLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNV-YANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYR 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q +  A      V D  N+  W A+I GP+ TP+E G F+L     EQYP +PP V+F++++FHPNV + TGE+CLDIL+N WSP + + +V  +I +L+  P   S  N ++ NL +
Sbjct:    9 LMRDFKRMQTDPPAGVSASPVPD--NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNV-YATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  A      V DD  +F W A I GP+ +PY+GGVF L    P  YP +PP+V F T+I+HPN++     ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +  ++R +T+  AM
Sbjct:    8 KELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DRDKYNRISREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ ++  A      V +D  +F W A I GP+ +PY+GG F L    P +YP +PP+V F T+I+HPNV+   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +   AR +T+  AM
Sbjct:    6 IHKELNDLAQDPPAQCSAGPVGED--MFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVN-SNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKT-DRDKYNRTAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC27_ARATH8.190e-2346.90Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBCD6_DROME1.070e-2239.68Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_YEAST1.070e-2238.89Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_WHEAT1.070e-2239.52Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC12_ARATH1.397e-2239.58Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SCHPO1.825e-2242.15Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC2_USTMA1.825e-2245.71Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_NEUCR1.825e-2240.48Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UB2D3_BOVIN1.825e-2238.89Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
U2D2B_RAT1.825e-2238.36Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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