DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:9..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE  ++ ++  A      V +D  +F W A I GP+ +PY+GG F L    P +YP +PP+V F T+I+HPNV+   G ICLDIL++ WSPA T+  V  +I +L+  P PD PL  +   + ++ D   +   AR +T+  AM
Sbjct:    6 IHKELNDLAQDPPAQCSAGPVGED--MFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVN-SNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKT-DRDKYNRTAREWTQKYAM 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 49/126 (38.89%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K ++ +  + P +       N+  W A+I GP+ TPYE G F+L     E+YP +PP V+FL+++FHPNV +  GEICLDIL+N W+P + + S+  +I +L   P P SP N ++  L +
Sbjct:    9 LMRDFKRMKED--SPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQ 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K ++ +  + P +       N+  W A+I GP+ TPYE G F+L     E YP +PP V+FL+++FHPNV +  GEICLDIL+N W+P + + S+  +I +L   P P SP N ++  L +
Sbjct:    9 LMRDFKRMKED--SPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 48/118 (40.68%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 356
            L +++K++Q +  A   +     + NI  W A+I GP +TP+E G F+L+    E+YP +PP V+F++K+FHPNV +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N
Sbjct:    9 LMRDFKKLQEDPPAG--VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPAN 123          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q++  A      V D  N+  W A+I GP+ TP+E G F+L  +  EQYP +PP V+F++ +FHPNV +  GE+CLDIL+N WSP + + ++  +I +L+  P   SP N ++  L R
Sbjct:    9 LMRDFKRMQQDPPAGVSASPVSD--NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNV-YANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHR 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.309e-22
Identity = 46/126 (36.51%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q++         V D  N+  W A+I GP++TP+E G F++     EQYP +PP V+F++++FHPNV + +GE+CLDIL+N WSP + + ++  ++ +L+  P   SP N ++  L +
Sbjct:    9 LMRDFKRMQQDPPQGVSASPVAD--NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNV-YSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  +      V DD  ++ W A I GP  +PY GGVF L+   P  YPL+PP++   TKI+HPN++   G ICLDILK+ WSPA T+  V  +I +L+    PD PL  +  ++ +  D + +++ A+ +T+  A+
Sbjct:    8 KELSDLGRDPPSSCSAGPVGDD--LYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNIN-SNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQ-DRKKYEATAKEWTKKYAV 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            + KE + + R+    P I     + N+  +   ++GP ++ YEGG F L   +P++YP+ PP VRFLTKI+HPNV  K G ICL  LK  WSPA  +++V  +I ALM  P PD PL+ D   + +  + +   + AR +T+  A+
Sbjct:    7 IIKEIETLTRDPP--PGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVD-KLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIAN-AREWTKKYAV 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 59/141 (41.84%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   18 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 437
            KE QR  +   P I       N   +   I GP  +P+EGGVF L   + + YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +   + AR +TRL A
Sbjct:   10 KETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNE-KEAMARAREWTRLYA 148          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   78 NIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            NI  W A+I GP +TP+E G F+L     + YP +PP VRF++K+FHPN+ +  GE+CLDIL+N WSP + + ++  ++ +L+  P P SP N D+  L +
Sbjct:   32 NIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNI-YANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFK 131          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
U2D2B_MOUSE1.825e-2238.36Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC2_KLULA2.383e-2238.89Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_CANGA2.383e-2238.89Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC1_CAEEL2.383e-2240.68Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_SCHPO3.112e-2239.68Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_YARLI5.309e-2236.51Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC4_CANAL9.055e-2237.50Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC13_SCHPO9.055e-2238.36Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2N_DICDI1.183e-2141.84Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC2_CRYNE1.545e-2143.56Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
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