DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_NITMU (30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T + +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL  +G KI  I DVTP+P
Sbjct:   19 GIAHVHASFNNTIVTITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEQAGRAAQEYGVKNLEVRIKG--------PGPGRESAVRALNAAGFKITSISDVTPVP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BUCCC (30S ribosomal protein S11 OS=Buchnera aphidicola subsp. Cinara cedri GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   68 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            MS++K  +PK+    +   + DG     +AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+  + R K+ GI  L + ++              +S +RAL  SG +I  I DVTPIP
Sbjct:    1 MSKKKLNQPKKR---IKRQILDG-----IAHIHASFNNTIVTITDRKGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCADRVKDYGIKNLEVMIKG--------PGPGRESTIRALNSSGFRITNIIDVTPIP 118          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_AZOSB (30S ribosomal protein S11 OS=Azoarcus sp. (strain BH72) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL   GMKI  I D+TPIP
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRPZ (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  146 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            FGVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   16 FGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RALSO (30S ribosomal protein S11 OS=Ralstonia solanacearum GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNNLGIKIQVIEDVTPVP 121          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_ERYLH (30S ribosomal protein S11 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGRKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITSIRDVTPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOSK (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:   68 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 469
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D +++ ++ G+  + ++++              +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOS4 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:   68 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 469
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D +++ ++ G+  + ++++              +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOS1 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:   68 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 469
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D +++ ++ G+  + ++++              +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METEP (30S ribosomal protein S11 OS=Methylobacterium extorquens (strain PA1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_NITMU1.093e-1135.1930S ribosomal protein S11 OS=Nitrosospira multifor... [more]
RS11_BUCCC1.093e-1134.0730S ribosomal protein S11 OS=Buchnera aphidicola s... [more]
RS11_AZOSB1.093e-1137.0430S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]
RS11_STRPZ1.427e-1133.9430S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_RALSO1.427e-1137.0430S ribosomal protein S11 OS=Ralstonia solanacearu... [more]
RS11_ERYLH1.427e-1139.8130S ribosomal protein S11 OS=Erythrobacter litoral... [more]
RS11_RHOSK1.864e-1132.8430S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]
RS11_RHOS41.864e-1132.8430S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]
RS11_RHOS11.864e-1132.8430S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]
RS11_METEP1.864e-1138.1830S ribosomal protein S11 OS=Methylobacterium exto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
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