DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METC4 (30S ribosomal protein S11 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   +  R +S+P+AA +AA++     K+ G+  L ++++              +S++RAL   G KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFRGSR-KSTPFAAQVAAENAGNAAKDYGLKNLEVRVKG--------PGPGRESSIRALNGCGYKITHIEDVTPIP 120          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_POLSQ (30S ribosomal protein S11 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +SA+RAL   G+KI  I+DVTP+P
Sbjct:   25 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAEVAGKAAVECGIKNLEVQIKG--------PGPGRESAVRALNSLGIKITEIQDVTPVP 123          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_NOVAD (30S ribosomal protein S11 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GIAHVNASFNNTMVTITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITAIRDVTPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_NITHX (30S ribosomal protein S11 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   20 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_JANMA (30S ribosomal protein S11 OS=Janthinobacterium sp. (strain Marseille) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +SA+RAL   G+KI +I+DVTP+P
Sbjct:   24 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESAVRALNNLGIKITQIQDVTPVP 122          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_CELJU (30S ribosomal protein S11 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   +  KE G+  L ++++              +SA+RAL   G KI  I DVTPIP
Sbjct:   21 GVAHIHASFNNTIVTITDRQGNALAWATSGGSGFRGSR-KSTPFAAQVAAERAGEAAKEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 119          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BRASO (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BRASB (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BRAJA (30S ribosomal protein S11 OS=Bradyrhizobium japonicum GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_METC41.864e-1138.1830S ribosomal protein S11 OS=Methylobacterium chlo... [more]
RS11_ALCBS1.864e-1136.1130S ribosomal protein S11 OS=Alcanivorax borkumens... [more]
RS11_POLSQ2.435e-1137.0430S ribosomal protein S11 OS=Polynucleobacter sp. ... [more]
RS11_NOVAD2.435e-1137.9630S ribosomal protein S11 OS=Novosphingobium aroma... [more]
RS11_NITHX2.435e-1138.8930S ribosomal protein S11 OS=Nitrobacter hamburgen... [more]
RS11_JANMA2.435e-1137.0430S ribosomal protein S11 OS=Janthinobacterium sp.... [more]
RS11_CELJU2.435e-1137.9630S ribosomal protein S11 OS=Cellvibrio japonicus ... [more]
RS11_BRASO2.435e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]
RS11_BRASB2.435e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]
RS11_BRAJA2.435e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium japoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
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