DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOPB (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOP5 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOP2 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  SG  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQASGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_NITWN (30S ribosomal protein S11 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   20 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METSB (30S ribosomal protein S11 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGTMGFKGSR-KSTPYAAQMAAEDCARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METFK (30S ribosomal protein S11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL   G KI  I DVTP+P
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNAVGFKITSISDVTPVP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_MAGSA (30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ A+FN+T I +TD  G  T+   + GM+      +S+PYAA +AA+D  ++  E G+  L ++++              +SALRAL   G +I  I DVTPIP
Sbjct:   21 GVAHVNATFNNTMITITDAQGN-TISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGMRTLEVEVKG--------PGAGRESALRALQAVGFQITSIRDVTPIP 119          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_SPHAL (30S ribosomal protein S11 OS=Sphingopyxis alaskensis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ A+FN+T I +TD  G        G M  K  R +S+PYAA + A+D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNATFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVCAEDAGKKAAEHGVRTLEVEVKG--------PGAGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_ROSDO (30S ribosomal protein S11 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   68 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 469
            M+R K R  K+ +  +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ +E G+  L ++++              +SALRALA +G  I  I DVTP+
Sbjct:    1 MARDKVRVKKKASKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQEHGVKTLEVEVQG--------PGSGRESALRALAAAGFNITSIRDVTPM 116          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHILO (30S ribosomal protein S11 OS=Rhizobium loti GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+DV+++ +E G+  L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNSIAWSSAGAQGFKGSR-KSTPFAAQMAAEDVAKKAQEHGMRMLEVEV--------CGPGSGRESALRALQAAGFTITSIRDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_RHOPB3.180e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP53.180e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP23.180e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_NITWN3.180e-1137.9630S ribosomal protein S11 OS=Nitrobacter winograds... [more]
RS11_METSB3.180e-1137.2730S ribosomal protein S11 OS=Methylocella silvestr... [more]
RS11_METFK3.180e-1136.1130S ribosomal protein S11 OS=Methylobacillus flage... [more]
RS11_MAGSA3.180e-1137.9630S ribosomal protein S11 OS=Magnetospirillum magn... [more]
RS11_SPHAL4.153e-1137.9630S ribosomal protein S11 OS=Sphingopyxis alaskens... [more]
RS11_ROSDO4.153e-1133.5830S ribosomal protein S11 OS=Roseobacter denitrifi... [more]
RS11_RHILO4.153e-1137.0430S ribosomal protein S11 OS=Rhizobium loti GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
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