DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METRJ (30S ribosomal protein S11 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_METPB (30S ribosomal protein S11 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_HERAR (30S ribosomal protein S11 OS=Herminiimonas arsenicoxydans GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AHI ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI +I+DVTP+P
Sbjct:   24 GIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESSVRALNNLGIKITQIQDVTPVP 122
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_THIDA (30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AHI ASFN+T + +TD  G        GG   K  R +S+P+AA +AA++  +  +E G+  L ++++              +S +RAL   G KI  I DVTPIP
Sbjct:   20 GIAHIHASFNNTIVTITDRQGNALSWATAGGAGFKGSR-KSTPFAAQVAAENAGKMAQEYGVKNLEVRIKG--------PGPGRESTVRALNALGFKIVAISDVTPIP 118
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_TERTT (30S ribosomal protein S11 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V G+AHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+   Q  +E G+  L ++++              +SA+RAL   G KI  I DVTPIP
Sbjct:   18 VDGIAHIHASFNNTIVTITDRQGNTLSWATAGGSGFRGSR-KSTPFAAQVAAERAGQAAQEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 118
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAHI ASFN+T + ++D  G       +GG+  K  R +S+P+AA +AA+   +   E G+  L ++++               SA+RAL  +G KI  I DVTPIP
Sbjct:   17 VEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSR-KSTPFAAQVAAEHAGRAALEYGVKNLEVRVKG--------PGPGRDSAVRALNATGFKITSITDVTPIP 117
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURTA (30S ribosomal protein S11 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURS3 (30S ribosomal protein S11 OS=Burkholderia sp. (strain 383) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURPS (30S ribosomal protein S11 OS=Burkholderia pseudomallei GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_METRJ4.153e-1138.1830S ribosomal protein S11 OS=Methylobacterium radi... [more]
RS11_METPB4.153e-1138.1830S ribosomal protein S11 OS=Methylobacterium popu... [more]
RS11_HERAR4.153e-1137.0430S ribosomal protein S11 OS=Herminiimonas arsenic... [more]
RS11_THIDA5.424e-1136.1130S ribosomal protein S11 OS=Thiobacillus denitrif... [more]
RS11_TERTT5.424e-1137.2730S ribosomal protein S11 OS=Teredinibacter turner... [more]
RS11_NITEU5.424e-1137.2730S ribosomal protein S11 OS=Nitrosomonas europaea... [more]
RS11_BURVG5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia vietnami... [more]
RS11_BURTA5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia thailand... [more]
RS11_BURS35.424e-1137.0430S ribosomal protein S11 OS=Burkholderia sp. (str... [more]
RS11_BURPS5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia pseudoma... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
back to top